Silurus meridionalis (southern catfish): 124397873
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Entry
124397873 CDS
T08004
Symbol
cacna1bb
Name
(RefSeq) voltage-dependent P/Q-type calcium channel subunit alpha-1A
KO
K04849
voltage-dependent calcium channel N type alpha-1B
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo04010
MAPK signaling pathway
smeo04020
Calcium signaling pathway
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
124397873 (cacna1bb)
04020 Calcium signaling pathway
124397873 (cacna1bb)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
smeo04040
]
124397873 (cacna1bb)
Ion channels [BR:
smeo04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
124397873 (cacna1bb)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
GPHH
Ca_chan_IQ
PKD_channel
Herpes_US9
Motif
Other DBs
NCBI-GeneID:
124397873
NCBI-ProteinID:
XP_046723685
LinkDB
All DBs
Position
15:4898536..5023865
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AA seq
2054 aa
AA seq
DB search
MPRFGDDASGRYGAAPGAGRGAARPAGAPGAQRVYKQSMAQRARTMALYNPKQTKQNCFT
VNRSLFIFSEDNVIRKYAKRITEWPPFEYMILATIIANCIVLALEQHLPANDKTPMSERL
DDTEHYFIGIFCFEAGIKIIALGFVFHKDSYLRNGWNVMDFVVVLTGILAKVGSDFDLRT
LRAVRVLRPLKLVSGIPSLQVVLKSIMKAMVPLLQIGLLLFFAIVMFAIIGVELYMGKFQ
KTCFKKGTDEPTANFPCGLEPPARQCPNNTDCRKGSAWKGPNYGITNFDNILFAILTVFQ
CITMEGWTEILYHTNDALGNTWNWMYFIPLIIIGSFFMLNLVLGVLSGEFAKERERVEKR
QEFLKLRRQQQIERELTGYLEWICKAEEVLLAEEDQNAEEKSPQDGAWFKRKPNNPVLKR
AKVKKGKNDLISAEEGEEHFTDISSVAPAGSPFARASLKSSKNDSSSYFRRKEKRMRFFI
RRMVKAQSFYWIVLCIVGLNTMCVAIVHYDQPEGLTQALYLAEFVFLGLFLSEMTLKMYG
LGPRNYFHSSFNCFDFGVIVGSIFEVVWAAIQPGASFGISVLRALRLLRIFKVTKYWNSL
RNLVVSLLNSMKSIISLLFLLFLFIVVFALLGMQLFGGQFNFDNETPTTNFDNFPAAIMT
VFQILTGEDWNAVMYHGIESQGGVPLGMFSSVYFIILTLFGNYTLLNVFLAIAVDNLANA
QELTKDEEEQEEAAKKSIALQKAMEVKEVSPMSAANISIAAFVKQNRDVLSRSSSVSSVH
SLKEQQRSLQKMSIWEQRTTQLRRHNLRSSSEALYNEMEPEDRLHMSSALHLRPDMKAHH
DRPLLVDKSHLPEGRETQEEAPPHKHHRCRGENGEAGEGRRHRHHRGGEHRGHQDGGHRN
QAEDGVDDKEHHHHHSHRSRETDGDGGNGAKGERNARGHREGEAGNGERRRDRPRVKAQT
TPNKEESRDKKEKDIPNHRFVDTEGDDMSSSPVPSPTERQEDSDNLKNISKVRSAAVNIP
VMVTAPPGESTIIPMSNMDGESLLLSEEKKDLDELNPNAPKQILPYSSMFVFGQSNPVRR
LCHYVVNLRYFEMCILMVITMSSIALAAEDPVNANAFRNHVLKYLDYIFTGVFTFEMVIK
MIDLGLLLHPGSYFRDLWNILDFIVVSGALVAFACSSFMGSQQSVTRGTKGKDINTIKSL
RVLRVLRPLKTIKRLPKLKAVFDCVVNSLKNVLNILIVYILFMFIFAVIAVQLFKGRFFY
CTDESKALEKDCRGQFLDYDGGEVDAKPRLWKKYEFHYDNVLWAFLTLFTVSTGEGWPMV
LKHSVDATYEDQGPSPGYRMETSIFYVVYFVVFPFFFVNIFVALIIITFQEQGDKAMSEC
SLEKNERACIDFAINAKPLTRYMPQDKQSFQYKMWKFVVSTPFEYSILTMIAINTVVLMM
KFSSASKPYEDMLKWLNIIFTAIFTLECVLKIIAFGLVNYLREAWNIFDFVTVLGSITDI
LVTEIKTQNKLINLSFLRLFRAARLIKLLRQGYTIRILLWTFVQSFKALPYVCLLIAMLF
FIYAIIGMQVFGNIELNHDSAINHHNNFQTFFQALMLLFRSATGEAWQEIMLSCLGGRKC
DMLSGSNDNGCGSDFAYFYFVSFIFLCSFLMLNLFVAVIMDNFEYLTRDASILGPHHLDE
FIRVWADYDPAACGRISYLDMYEMLRHMSPPLGLGKKCPSRVAYKRLVRMNMPIADDNTV
HFTSTLMALIRTALDIKLASGVLAQRLCDADLRREINKVWPSLSSKTVDLLVTPHKHNEL
TVGKVYAALMIFDYYKQNRAKRLQEQQPTSGTLSKIGSLFKPMLPLTHIHEQEPPFKGAK
LPHPSRTDSSPHLDFHPTTPLLTNGEPVKSSTIKYSSSAETLQKGRDSAYLEDMPKTESQ
ELVEMTDMENNSDVGGFSTLEGHGRAASMPRLSAGFQRSQLRHTTGKYLAPIKDGSPMHR
SASSLASQKGGTELNLREYALSVRQQHRIRRKRETECTNIIIIIDVTAAETRKINPWTEL
LVRNSLALWIRRQI
NT seq
6165 nt
NT seq
+upstream
nt +downstream
nt
atgcctcgcttcggagatgatgcgtctgggcgctatggagctgctccgggcgccgggaga
ggagcagcgcggcccgcaggcgcaccgggcgctcagagggtctacaagcaatcgatggct
caaagagcaaggaccatggctttgtacaaccctaagcagaccaagcaaaactgcttcacc
gtcaatcgctcgctcttcatcttcagtgaggacaacgtgatccggaaatacgccaagagg
atcactgagtggcctccatttgaatacatgatccttgcgaccatcattgctaactgtatt
gtactggcactggagcaacacctgccagccaatgacaagacgcccatgtctgaacgcctg
gacgacacagagcactacttcatcgggatattctgtttcgaggctggcattaagatcatc
gccctgggcttcgtctttcacaaagactcctacctccgcaacggatggaacgtaatggac
ttcgttgttgtcctcactgggattttggccaaggtgggttcagacttcgacctgaggaca
ctgcgggccgtgcgagtgctgagacctctcaaactggtgtcaggaatccctagcctacag
gtagtcttgaagtccataatgaaggccatggttcctctgctgcagatcggtctgctcctc
ttcttcgccattgtcatgtttgccattataggagtggagctctacatgggcaagtttcag
aagacctgcttcaaaaaagggacagatgagccgaccgcaaatttcccatgtggtttggaa
cctccggctaggcagtgtcccaataacacagattgtaggaaaggcagtgcatggaaagga
ccaaactatggcatcactaactttgacaacatcttgttcgctatacttaccgtcttccaa
tgcatcacaatggaaggatggaccgagatcctttaccataccaatgatgccttgggtaat
acatggaactggatgtacttcatccccctcataatcatcggctccttctttatgcttaac
ctggttttgggtgtcttatcgggagagtttgccaaagaaagagagcgtgttgagaagaga
caggagtttctaaagctacgcaggcaacaacaaattgaaagagagttgactggttacctt
gagtggatctgtaaggcagaggaggttttgctggctgaggaggatcagaacgcagaagag
aaatctccacaggatggagcttggttcaagaggaaaccaaacaacccagtgctgaaaaga
gccaaagtcaaaaaggggaagaatgacctcatcagtgccgaggagggtgaggaacacttc
acagacatttcctcagttgcccctgctggatctccttttgcccgagccagcctaaaaagc
agcaagaacgacagctcatcatacttccgtcgcaaagagaaacggatgcgcttctttatc
cgtcgcatggtgaaagcccaaagcttctattggattgtgttgtgcatagtgggcttgaac
acgatgtgcgttgccatcgttcactacgaccaacctgaggggctcacccaagcactgtac
ctggctgagtttgtgttcctgggtctgtttctatctgagatgactctgaagatgtatggc
ctggggcccaggaactactttcactcctcattcaactgctttgactttggggtcatcgtg
gggagtatatttgaggtggtgtgggcagccatccaacccggagcctctttcggtattagc
gtcttgagggctttacgtctgctcaggatatttaaagtgaccaagtattggaactctctg
aggaatctggtggtgtcactactcaactcaatgaaatccatcatcagcttgctcttcctc
ctctttctctttattgtggtctttgccttactgggcatgcagctctttggaggacagttt
aattttgataacgaaacacccactacaaatttcgacaacttccccgctgccataatgacc
gtcttccagattttgacaggagaagactggaatgcagtaatgtatcatgggattgaatct
cagggtggtgtcccacttgggatgttctcctccgtttactttatcatacttactctcttt
ggaaactacactcttcttaatgtgttcttggctatcgctgttgataacctggccaatgct
caggagctgacgaaggacgaggaagagcaagaggaagctgccaaaaagagcatcgcgctg
cagaaggcgatggaggtgaaggaggtcagcccaatgtcagcagctaacatatctattgct
gcttttgtaaagcaaaatcgagatgtgctctctcgcagctcttccgtcagcagcgttcac
tcacttaaggagcagcaacgctctctgcagaagatgtctatctgggagcagcgaactact
caactccgtcgccacaacctgcgcagtagcagtgaagctctctacaatgagatggagcct
gaggatcggttgcacatgtcctcagcactacacctgcggcccgacatgaaggcacaccac
gatcgacccttgctggtggataaatctcacctgccagagggcagggaaacccaagaggag
gcacccccacacaaacaccaccggtgccgtggtgagaacggtgaagctggcgaaggacgc
cgccatcggcaccatcgtggtggtgaacacagagggcaccaggatggaggacataggaac
caagcagaggatggtgtcgatgataaggagcaccatcaccaccattcacaccgttcccga
gagaccgatggtgatggcggtaatggagcaaaaggggagcgaaatgcaagaggacacaga
gagggggaagcagggaatggcgagaggaggagagacaggcctcgtgtcaaagctcaaact
acacctaacaaggaggagagcagggacaaaaaagagaaagatatcccaaaccacaggttt
gtggatacagagggtgatgatatgagctcaagtcctgtgccatctccaacggagagacaa
gaagactcagataatctaaaaaacatctcaaaagtgagatcagctgcagtcaacatccct
gttatggtcactgccccacctggagagtccaccatcattcccatgagcaacatggatggt
gagagcctgctcctgagtgaagaaaagaaggatctggatgaactgaatccgaatgctcca
aaacaaatcctaccctacagctctatgtttgtgtttggtcagtccaatcctgtgcgaagg
ttgtgccactatgtggtcaacttgcgctacttcgagatgtgcattctcatggtgattacc
atgagcagcatcgcgctggctgccgaagaccctgtcaatgctaatgcttttcggaaccat
gtgctgaaatatttagattacatcttcactggtgtgttcacatttgaaatggtgataaag
atgattgaccttgggcttcttctccacccgggctcctacttcagagacctgtggaacatt
ctagacttcattgtggtcagcggtgccctggtggcttttgcctgctcgagcttcatggga
tcacaacaaagcgtgaccagagggaccaaaggcaaggacattaacaccatcaagtccctc
agggtccttcgagtgcttcggcccctaaagactatcaaacggctacctaagctcaaggcg
gtctttgactgtgtggtgaactctctgaagaacgtgctcaacatcctcattgtctacatc
ctcttcatgttcatctttgcggtgatcgctgtgcagctcttcaagggaaggttcttctac
tgcacagacgaatccaaagctcttgagaaggactgcaggggtcagtttctggattacgat
ggaggtgaagtggatgccaaaccacgcctatggaaaaagtatgagtttcactatgacaac
gtgctgtgggctttcctcacacttttcaccgtttcaacaggagagggttggccaatggtg
ctgaagcattctgtagatgccacttatgaggaccaagggccgagcccaggctatcgcatg
gagacgtctatcttctatgtggtctattttgtggtcttcccttttttctttgtcaacatt
tttgtagccttgatcatcatcacgttccaggagcaaggggacaaggccatgtctgaatgc
agcttggagaagaatgagcgggcgtgcatcgactttgccattaatgccaagcccctgaca
cgctatatgccccaggataagcagtccttccagtacaagatgtggaagtttgtggtttca
actccatttgaatattccatcctgactatgattgcgatcaatactgtggttcttatgatg
aagttcagtagtgcttcgaagccttatgaggacatgctgaagtggttgaacatcattttc
actgccatcttcaccctggaatgtgtcctgaagatcatcgcttttggtcttgtgaactat
ctgagggaagcctggaacatattcgacttcgtaacagtactgggcagtatcacagacatc
ctggtcactgaaattaagacgcagaacaagctgatcaaccttagcttcctgaggctgttt
cgtgctgctcgactcatcaagctccttcggcaaggctacaccatccggatcctgctctgg
acctttgtccagtcttttaaggcacttccctacgtgtgtctgctcattgccatgctcttc
tttatctacgccatcattgggatgcaggtgtttggaaacatcgagttgaatcacgactca
gcgatcaaccatcacaacaacttccagacgttctttcaggcacttatgctacttttcagg
agcgccacgggcgaggcgtggcaggagattatgctgtcatgtttgggaggcaggaaatgt
gacatgctctcaggctcgaacgacaacgggtgtggcagcgattttgcatacttctatttc
gtctccttcatcttcctctgctcgtttctgatgctgaatttgttcgtggctgtcatcatg
gacaactttgagtacttgacacgagatgcttccatcctcggacctcaccatctggatgag
ttcatccgagtctgggcggattacgaccctgccgcctgtgggcgcatatcctacctcgat
atgtacgaaatgctacgtcacatgtcccctccgctaggtttgggaaagaaatgtccgtca
cgagttgcctacaagcgcttggtgaggatgaacatgcccattgctgatgacaacacagtc
cactttacgtccacgctgatggctctcatacgcaccgccctggatatcaaactggcatca
ggtgttcttgcccagcgtttatgcgacgctgacttgaggagggagattaataaggtgtgg
ccgagcctatcttcaaaaactgtggacttgctggttacacctcataaacataacgagctg
acggttggaaaagtgtatgctgcgctgatgatctttgattactacaagcagaaccgggcc
aaaagactccaggagcagcagcccacttcaggcacactgagtaaaattggatctctcttc
aagccaatgttgccactcacccatatacatgaacaagagccacctttcaagggtgccaaa
ctgccacatccttcacgaacagattcatctccacatctagacttccatcccacaacccct
cttttgaccaatggggaaccagtaaaaagcagtaccatcaagtattcttcttcggcagag
acgcttcagaagggcagggactcggcctatttagaagatatgccaaaaactgaatctcag
gaattagtagagatgaccgatatggagaataattctgatgtagggggcttctccacactg
gagggccacgggagggcagcctcaatgcccagacttagtgcaggcttccagcggagccag
ttgcgccacaccaccgggaaatacctagcacctatcaaagacggcagtcccatgcaccgc
tcggcttcatcactggcttctcagaaaggtgggacagagttgaatttaagagaatatgca
ttgagcgtccgccagcagcacagaatcaggagaaagagagagacagagtgcaccaacatc
atcatcatcatcgatgtcaccgccgcagagacaagaaaaataaatccctggaccgagcta
ttagtgaggaacagcctggctttgtggatacgacgacagatatga
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