Silurus meridionalis (southern catfish): 124397897
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Entry
124397897 CDS
T08004
Symbol
nup98
Name
(RefSeq) nuclear pore complex protein Nup98-Nup96 isoform X1
KO
K14297
nuclear pore complex protein Nup98-Nup96
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
124397897 (nup98)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smeo03019
]
124397897 (nup98)
03036 Chromosome and associated proteins [BR:
smeo03036
]
124397897 (nup98)
Messenger RNA biogenesis [BR:
smeo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
124397897 (nup98)
Chromosome and associated proteins [BR:
smeo03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
124397897 (nup98)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup96
Nucleoporin2
Nup98_GLEBS
Nucleoporin_FG
Motif
Other DBs
NCBI-GeneID:
124397897
NCBI-ProteinID:
XP_046723721
LinkDB
All DBs
Position
15:21258608..21282140
Genome browser
AA seq
1805 aa
AA seq
DB search
MFNKSFGTPFGGGTGGFGTSSTFGQQNTGFGATGGFGASAFGTTTNTGGLFGATQNKPGG
LFGSSTFSQPVTSSTSSGFGFGATSGGTSNSLFGSTNTGSGGLFSQQGNAFGANKPASFG
TFGTNTSSGGLFGATNAAANPFGATSSLFGPSGFTATQPGTTIKFNPPTGSDTMVKSGVT
TSINTKHQCITAMKEYENKSLEELRLEDYQAGRKGPSNPMAATAGGLFGATAAAPPSTAA
GLFGSSGTGFSFNQAKPSFSAGTSGFGATPGGLFGQPAQTNSLFKPFSQATTAPNTGFSF
GGTNTMGQANTSTMGLFGNTAASQAGGLFGNTANTSTAAGFGTGTGLFGQPNTGFGNVGT
QNLFGNKPAGFGTTTTSAPSFGTGTGLFGNKPALSLGTNTNTSSFGFGANPAVGSLFGNK
SATGALGTGLGAGFGAGVGAGTTSLFGNNQNKIGSTLGTVGAFGGNSFNTGNSALNFGAP
QQPVALTDPNAAAQQAVLQQQLNALNYSPFGDSPLFRNPLSDPKKKEERLKPTNPAAQKA
LTTPTHYKLTPRPATRVRPKALTSSGSGKSQLFDGLDDDEPSLTNGAFMPRKSIKKLVLK
NLNGSSLYNSPLSRETEDLNSPSEYPENGLSPRADTEENQDLEPQGGAEDDLQVSKFYTN
RITKPILHTQPSPSLQDTISELNMRRAISARNGLDLSSEDISLGDESIQEERDEELEAQR
PPHPAGIVLTRVGYYTLPSMEDLGKMLNENGECIVENFTVGRKGYGSVYFPGEVNLTNLN
LDEIVHFRRKEVIIYSDDKDKPSVGEGLNRPAEVTLDGVWPNDKTTCNQIKSPQRLSEMN
YEERLENASRKQGARFLEYRPETGSWVFEVPHFSKYGLQASDEEDDVPPAKTETKKIKTA
ISAGLQQIPLPQQHQQMAPQAQSTAVLELLSRVSELDSDMADITQEPPADGVLCDEDDSV
LEDDTRMALRAATPAEPEPISASSQIASSLGINPHTLQIMKASLFAGDDDDGDLFYEQLP
LKVLEEVSSPRLLFAKSQARLSVGGLLQSKLTSGGGLFSQLPEVPFGAILQKPSKPAEAP
WPSLSTSIVLPPPVPEVTLRTVGARRLDGPVPLDNSVTVGKSRLLMDAALYMGRSFRVGW
GPNWTLVHCGNRLSTTAESKDQNKDSMGFGFLPRPTKNRQITESPFKVHLEQVVGMEPKE
TSESLAVYHQPLEIGLRHSTINTDHICPFIQPEKGVNALHDYAKWIVEVLKQQGAGDVVL
GHWQQVWTLCEALWGRLADQDLKVGGGYREQHARRHGFSLWLSESAAQRIQDEVGHKQHH
VDAIFSYLTGNCISEACKLAQKNGDHRLSLLLSQAVGSQGSRDLLALQLSDWNRMQTDSF
IQEERLHIFALLAGKPVWEATECYINVCSELDWKRCLAVHLWYMLPPTASVADALAKYEA
AFQGLDDGRKYACAPLPPYMDDAEQDDLEEMEDTESKKPLYDICFHLLKLYSDKHYSLQQ
LLDPTTVTAEQLDYRLSWHLWNVLQALNYTHLSGSCQSLLHTSYAAQLESAGLWEMAVFV
LLHIPDPLLREHAVREILNQHCTLEETEESAEKERFLTDKLLIPKQWIHEAKATRAGRDG
DRHREALHLYRAGHWNRCHRLVIQNLASDCIINDNHGYLKEFLEGLAVPERSVQIQDWDT
SGRVYLDYICVIQTLKAIQQMDSPGYELERLQTDVTSLCSRIELLPCFKAKDRLAQSEMA
KRLANILRAVLSLELGGDSAVDPRHIPLCQLAPHIGRLPMPEDYALEELRSLTQSYLREY
IVVSH
NT seq
5418 nt
NT seq
+upstream
nt +downstream
nt
atgtttaacaagtcgttcggtactcccttcggaggaggaacaggaggatttgggacttca
tccacgtttgggcaacagaacacagggtttggagcgacaggtggttttggtgcttctgct
tttggaaccacaaccaacaccggtggactttttggggcaacacagaacaaacctggtggg
ctttttggctccagcacattcagccagcccgtcacttcgtctactagcagtggatttggg
ttcggtgccacaagtggcggtacctcgaacagcctctttggcagtactaatacaggaagt
ggagggcttttctctcagcaaggaaatgcattcggtgccaataaacccgcctcttttggt
acttttggaaccaataccagcagcggaggattgttcggggcaaccaacgctgccgctaat
ccgttcggagcaacctcttctctgttcggaccctctggctttactgcgacgcaacctgga
acgactatcaaatttaatccaccaaccggaagtgacacgatggtcaagagtggtgtgacg
accagcatcaacaccaagcaccagtgcatcacagccatgaaggaatacgagaacaaatct
ctagaggagctaaggctggaagattaccaagcaggaagaaagggaccctcaaacccaatg
gcagccactgcaggcggcttgtttggggccacagccgctgcacctcccagcactgctgct
ggtctgttcggctcctcgggtaccggcttcagcttcaaccaggccaagccttcattcagc
gctggtaccagtggctttggggcgaccccgggtggtttatttgggcagccagctcagact
aatagtctcttcaagcccttcagtcaggccaccaccgccccaaacactggcttctccttc
gggggcaccaacaccatgggccaggccaacaccagcactatgggtctgtttgggaacact
gctgcctcgcaggctggaggtctgtttgggaacacggccaacaccagcacggccgcgggc
tttggcacgggcaccgggctctttgggcagcccaataccggctttgggaatgtgggtaca
cagaatctgtttggtaacaaacctgcggggtttggcaccaccaccacgagtgctccctcc
tttggcacaggcactggcctgttcggcaacaaacctgcactcagtttagggacaaacacg
aacacttccagctttgggtttggagccaatcctgctgtaggtagtttgtttggaaacaaa
tctgctactggagcactcgggacaggactcggagcgggttttggagcaggtgtaggtgca
ggtacaacgtctctgtttggaaataaccagaacaaaatcggatccactctggggacagta
ggggcgttcgggggcaatagtttcaacacaggaaacagcgcgctgaactttggagcaccg
caacaacctgtcgccctgactgatcccaacgcagcagcccagcaagcagtgctccagcag
cagctcaatgcgctgaactattctccttttggagattcacctctgtttagaaacccactc
tcagaccccaagaagaaagaggagcgcctgaagcctacaaatccagccgcccagaaagcc
ctgacgacccctacacactacaagctcaccccccgtcctgccacacgtgtgcgtcccaag
gccctcacctcatcaggttctgggaaatctcagcttttcgatgggctagacgacgatgaa
ccttctctcactaacggagcttttatgcccaggaagagcataaaaaaacttgtgttgaag
aatttgaacggaagcagtctttacaacagcccactgagcagggagactgaagacttgaac
tccccatcagaatacccagagaacggcctcagcccgagagcagatacagaagaaaaccaa
gacctagagcctcaaggaggcgcagaggacgacctgcaagtctcaaagttctacaccaac
cgcattactaagcccatcctgcacacccagcccagtccctcactgcaagacaccatcagc
gagctgaacatgcgcagagccatcagcgctcgcaacggcctggacctcagcagtgaggac
atctctttgggagacgagagtattcaggaagagagggacgaggagctggaggcacagaga
cctcctcacccagcaggtatcgtgctcacccgggtgggctactacaccctgccgtccatg
gaggatctcgggaagatgctgaatgaaaatggcgagtgtatcgtcgaaaacttcacagtt
ggaaggaaaggctacggctctgtctactttcctggtgaagtgaatttgacgaacctgaat
ctcgatgaaattgtgcactttagacgaaaggaagtaattatctactctgatgacaaagat
aaaccttctgtgggagagggcctgaacagaccagcagaagtgacccttgatggtgtttgg
cccaacgacaaaaccacatgcaatcagatcaaaagtcctcagcggctgagcgagatgaac
tacgaggaacgcctagagaacgcttcacgcaagcaaggcgcccgcttcctggagtacaga
cctgaaactggttcctgggtgtttgaggtgccacacttttccaagtacggcctgcaagcc
tcagacgaggaggatgacgtccccccggctaaaactgagacgaagaagattaaaacggcc
atctcggcgggactgcagcaaatcccactgccccagcagcaccaacagatggcgccacaa
gctcagagtacggcggtgctggagcttctgagccgcgtgtccgaactggacagcgacatg
gccgatattacccaggagcctccagcggatggagtgttgtgtgacgaggatgacagcgtg
ttggaggatgacaccaggatggcactaagagcggcgacccctgctgagccagagcccatc
tctgcctccagccagatcgcctcctcgttaggaatcaacccacacacgcttcagattatg
aaggcatccctgtttgctggtgacgacgacgacggcgacctcttttatgagcagctccct
ctgaaggttttggaggaggtgtcgtctccccggctcttatttgcaaaatcccaggccaga
ctatcagtcggtggccttctgcagagcaagttgacttctggtggagggctgttttcacag
ctgcctgaggttcccttcggagcgatccttcagaaaccgagtaagccagcagaagctcca
tggccctcactgagcacctcgatcgtattgcctcctccggtccctgaggtcactctgagg
actgtgggagcacgcagactggatggcccagtgcctcttgacaattcagtgactgtggga
aaaagccgtctcttgatggatgcagcgctgtatatgggccgctctttcagggtgggatgg
ggccctaactggacacttgtgcattgcgggaatcgtctcagcacaactgcggagtcgaag
gatcagaacaaagactccatgggcttcgggttcctgcccagacctacgaagaaccggcaa
atcactgaaagcccctttaaagtacatctggagcaggtggtggggatggagcccaaggag
acgtcggagagcctggctgtgtaccaccagccgcttgagatcgggctcaggcacagcacc
atcaatactgaccatatctgccctttcatccagccagagaaaggagtgaacgctctgcac
gattatgctaagtggattgtagaggttctcaagcagcaaggagctggagatgttgttctt
ggtcactggcagcaagtatggactctgtgtgaagctctttgggggcggctcgcagatcag
gatttgaaggtcggcggaggttatcgggagcaacatgcgagaaggcacggtttctccctc
tggctatctgagagcgccgcccaacgcattcaggacgaagtgggccacaagcagcaccac
gtcgatgccatcttcagctacctgactggcaactgcatcagtgaggcctgcaaattagcc
cagaagaatggagaccatcgtctctcattgctgctgtcccaggctgtgggttctcagggc
agcagagatcttctggctctccagttatcagactggaacagaatgcagactgactctttc
atccaggaggagaggctgcacattttcgccctactcgcaggcaaacctgtttgggaggca
acagaatgctatataaacgtgtgctccgaactggactggaagcgctgtttggctgtgcac
ctgtggtacatgctgcctcctacagcctctgtggcagacgctctcgccaaatacgaagcc
gcctttcaaggtttggacgatggaagaaaatacgcatgtgctcctctccctccttatatg
gatgatgcagaacaggacgatttggaggagatggaggatacagaatctaaaaagccgctt
tatgacatctgttttcatttgctcaaactttacagtgacaagcactacagtctgcagcag
ttgctggaccccactacggtgacggcagagcagcttgactacaggctaagttggcacctg
tggaacgtgctccaggccctgaattacacccacctgtcagggtcatgccagagtctccta
cacacgagctacgctgcccagctcgagagcgcaggcctctgggagatggcggtttttgtt
ctgcttcacatccctgacccattgcttcgagagcatgctgtgcgggagatcctgaaccag
cactgcactctggaggagaccgaggagtctgcagagaaggaacgcttcctcaccgacaag
ctgctcatccccaagcagtggattcatgaagctaaggctacccgggctggcagggacgga
gaccgacaccgcgaagcgctccatctgtacagggccggacactggaaccgctgccatcgg
ctcgtcatccaaaacctggcttcagactgcatcattaatgataaccacgggtatctgaag
gagttcctggagggcctggcagtgcccgagcgcagcgtgcagatacaggactgggatacg
tcgggacgtgtctatctggactacatttgtgtaattcagactctaaaagccattcagcag
atggacagccctggatacgagctggagcggctacaaacagatgtgacatccctgtgcagc
aggattgaactccttccctgtttcaaggccaaagacagactggcccaatcagaaatggcc
aaacgtttggctaacatcctgcgcgcagtgctaagcctcgaactgggcggagacagcgcc
gtggatcctcgtcacatccccctgtgccagctcgcgccccacatcggacgcttacccatg
cctgaggactacgccctggaggaactccgcagcctcacgcagtcttaccttcgagaatac
atcgtcgtcagtcactga
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integrated database retrieval system
