Silurus meridionalis (southern catfish): 124397990
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Entry
124397990 CDS
T08004
Symbol
nfrkb
Name
(RefSeq) nuclear factor related to kappa-B-binding protein
KO
K11671
nuclear factor related to kappa-B-binding protein
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
124397990 (nfrkb)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
smeo03036
]
124397990 (nfrkb)
Chromosome and associated proteins [BR:
smeo03036
]
Eukaryotic type
Chromatin remodeling factors
INO80 complex
124397990 (nfrkb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NFRKB_winged
ASXH
Motif
Other DBs
NCBI-GeneID:
124397990
NCBI-ProteinID:
XP_046723898
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All DBs
Position
15:complement(16886947..16901895)
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AA seq
1288 aa
AA seq
DB search
MDSLDHMLTDPLDSGMDYGGCVMEECLLGNCRVRIPEDFLEDPEIFFSVMSESTWSEILT
DAQRQHLRQLLPHFPENNSAEQDKVISDLFNGQNFCFGNPLHLAQKLFRDGYFNPEVVKY
RQLCTKSQKKRQIYCLQQYYHKLLKQILVSRKELLDMAVRSGPEMEVKRRYPPPSDREER
EQRVRRRVSRILREVKTECGDSSVSSDEDDTASWLSTPPSPSSPTTTVSLRVLPSLSTQD
MKAIDKPELGEKDLRALLRRHREKRKRQPDHPDLMTSDLHLGDIMSRVNIGRKGSNMALI
DLALSKKKIREEKRRKKMRPIKTESDDGCEGQTPAASLSATITDSTPALLQSVKEEAVEE
SQNSPDAVQEIAISFFHLLEGILRQENLASSSLIEEKVQQWQASPGSALYPWFSLAPCWS
ELVVPSLHFLAGETGSAALPSGFTPYVEYRELTQQWKWIGPTQDSEKDLNAICMLWLESK
DHVVVKQEGEETAELTPPAPRVWTDYVVRPSTGEERHVFQEQEQQRYDQPHKAFTFRMHG
FESVVGPVKGVFDKETSLNKAREHSLLRSDRPAYVTILSLVRDAAARLPNGEGTRAEICE
LLKDSQFLAPDVTSAQVNTVVSGALDRLHYEKDPCVKYDIGRKLWIYLHRDRSQEEFERI
HQAQAAAAKARKALQQKPKPTPKPKSGNKDAAVKGSAPEGQCSAPEGVSIPAVSLPQPPS
TPTPSTPGTPKSPLPPTVSTPTKAGVPDPVKTSPSVLLVSPPSMPQLGTLLSAAQVAPQA
SQQASVQPAARVVAHSASTGSLPQVRVVTAQPGLTAASAGQAATLIHHQTPHHIRLPVSV
AHSKGIAQAVVTLPLRSQSTGNSIQVQASRGQTGISVPGLASAVAVSKAQSSSPGSPAPN
TSSPAVLQGVTSQNIIKQVAITGQLGMKAQNPTGIPLTATNLRIQGKDVLRLPPSSITTD
AKGQTVLRITPDMMATLKLTPDMLASASSTAAKSISATLHVTPQQAPPTVSSNPVTPATA
EALTVKSPSTLSAPGTTTLVKATCDTAIRLMPALAVTMADPKARTFSTVTSSESKAAGTT
IRIVPSLGVIPQKQGQTVPVTTSTSAKPGTASTGAATVTIATSGVVGTKGVTLGTPAVGS
PLSLGTAAATVRQVPATATVVATQPGKLPARITVPLSVLSQPLKSKSVVTTPLLKGNIST
NIGNLGRNIILTSMPAGTKLIAGNKPVSFVTAQQLQQLQQQGQATQVRIQTVPAQQLQQH
SASSSPKSTVSTVVVSTAPSAKTTPDPS
NT seq
3867 nt
NT seq
+upstream
nt +downstream
nt
atggattctttagatcatatgctaacagacccattagattcagggatggattatggtggc
tgtgtgatggaggagtgcttgctgggaaactgtagagtccggataccagaggattttcta
gaagacccagagattttcttctctgtgatgagtgaaagcacctggtctgagattctaact
gatgcccagagacaacatctccgtcagctcctaccgcactttccagagaataacagtgca
gagcaggacaaggtcattagtgacctcttcaacggtcagaacttctgctttggaaatcct
ctgcaccttgcccagaagctttttagagatggctactttaaccctgaagtggtcaaatac
aggcaactctgcacaaagtcccagaaaaagcgacaaatctactgtcttcagcagtactac
cacaaacttctcaagcaaatccttgtctccagaaaggagttgttggatatggctgttcgc
agtgggccagagatggaagtgaagcggcgctaccctcctccttcagacagagaagaacga
gagcagcgtgtgaggcgcagagtcagccgtatattgcgggaggtgaagactgagtgtggg
gacagcagcgtgtcctctgatgaagatgatactgcttcttggctgtcaacgcctccatcc
ccatcttctccaactacgacagtctctctcagggttttgcccagtctgtccacccaggac
atgaaagctatagataagccagagctgggagagaaggacctgagagccttgctgagaaga
cacagagagaaaaggaaacgacaaccagaccatcctgacttgatgacatcagacttgcac
cttggtgacatcatgtcgcgagtaaatatcggcagaaaaggatccaacatggccttaatc
gacttggccttgtccaagaagaagatcagggaggaaaaaaggaggaagaagatgcggccc
attaaaaccgaatccgacgacggctgcgagggtcagacaccagcggcctcattgtctgcc
accattaccgacagcacacctgctctcctgcagagcgttaaggaagaagctgtggaggag
tcccaaaacagccctgatgcagtacaggaaatcgctattagcttctttcatctgctagag
ggcatcctcaggcaggagaatctggcatcctcttcactgattgaggagaaggtacagcag
tggcaggcctctcctggtagtgcactctacccctggttctccttggccccctgttggtca
gagctagtagtaccttccttacatttcctagcaggggagactggctctgcggctctacct
agtggctttactccatatgtagaatacagagagctcacacagcagtggaaatggattgga
cccactcaggacagtgaaaaggatctcaatgctatttgcatgctttggcttgagtcaaag
gaccatgttgtagtcaagcaagaaggggaagaaacagcagaactaactcctccagctccc
agagtgtggactgattatgtggtaaggcccagcactggggaggaacgacatgtttttcaa
gagcaggagcagcaacgctatgatcagcctcataaagcctttaccttccgcatgcacggc
tttgagtcagtggtggggccagtcaaaggcgtatttgataaggagacttcactcaacaaa
gctcgtgagcactccctgctgcgctctgaccgtccagcttatgtcaccatcctctcactg
gtgcgagatgcagctgccagactgcccaatggtgaaggcacccgagctgagatatgtgag
ctgcttaaagactcccagttcctggctcctgatgtcaccagtgcacaggtaaatacagtt
gttagtggtgctctcgaccgtctgcactatgaaaaggacccatgcgtgaaatacgatatc
ggccgcaagctgtggatctacctgcaccgagaccggagtcaggaggagtttgagaggatt
caccaggctcaagcagctgcagccaaggcaagaaaagctctgcagcagaaacccaaacca
acccccaagcctaagtctggaaacaaggatgcagctgtgaagggcagtgctccagagggc
cagtgctcagctcctgaaggggtttcgatacctgctgtcagcttacctcaacctcctagc
acaccaacaccaagcaccccaggcacaccgaaatctccactgccccctactgtgtctaca
ccaaccaaagcaggtgtaccagatcctgtcaaaaccagtcctagtgtcctgctggtatct
cctccctccatgcctcagctgggcactttgctgtctgctgctcaggttgctcctcaggcc
tcccagcaggcctcggtgcagcctgcagctcgagtggtagctcattcggcttcaacaggg
tctctgccacaggtgcgcgtagttactgctcagcccggccttactgctgcttctgcgggc
caagcagccacattgattcatcaccagaccccccaccatatcagactacctgtcagtgtg
gcccacagtaaaggcattgcccaggctgtggtgactttgcctttacggagccagtccaca
ggaaattctatccaggtgcaagcatcaagaggtcagactggcatctctgtaccaggtttg
gcttcagctgttgctgtcagtaaagctcaaagcagttcgccaggaagccctgctccaaac
acctcgtctcctgcagtgctacaaggggtcaccagccagaatatcatcaaacaggttgct
attactggtcaattaggtatgaaagcccagaacccaacaggcatcccactgactgccacc
aacctcagaattcagggtaaagatgtgctgcgactgccaccctcttcaatcaccactgac
gctaaaggacagacagtgttgcgcatcaccccggacatgatggctacactcaaacttacc
cccgacatgctggccagtgccagcagcactgctgccaaaagcatttctgccaccctgcat
gtgaccccacagcaagcccctcccaccgtttcgtcaaaccctgttaccccagccaccgct
gaggcgcttaccgtcaaatctccctctaccttgtcagcaccaggcaccactaccctggtg
aaggccacatgtgacactgctattcgcctcatgcccgccctggctgtcaccatggcagac
cccaaagcccgcaccttctccactgtcacctcctcggaatcaaaagctgccgggaccacc
attcgcattgtacccagccttggtgtgataccacaaaaacagggtcagacggttccagtt
accaccagtacaagcgccaaacctggcactgcttcaacaggggcagccacagttacaata
gcaactagtggagtggtggggactaaaggggtgacactgggaactcctgctgtgggctct
ccactctctctgggcactgctgcagccacagtgagacaagttcctgctactgctacagtg
gtggccacacagccagggaagctacctgcaaggatcactgtgcctttgtctgttcttagc
cagcctctgaagagcaaaagtgtggtcactacaccactactgaaaggaaacatcagtact
aatatcggtaatcttggaagaaatattatcttaaccagcatgccagcaggcaccaagctc
atcgctgggaataagcctgtcagcttcgttacagctcaacaactgcagcagctgcagcaa
cagggccaggccacacaggttcgtatccagactgtccctgcacagcaactgcagcagcac
tcagcatccagttctcctaaatctacagtctccactgtggtcgtgtccactgccccctca
gccaaaacaacccctgacccatcttaa
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