Silurus meridionalis (southern catfish): 124398079
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Entry
124398079 CDS
T08004
Symbol
pafah1b1b
Name
(RefSeq) lissencephaly-1 homolog B
KO
K16794
platelet-activating factor acetylhydrolase IB subunit alpha
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo00565
Ether lipid metabolism
smeo01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09100 Metabolism
09103 Lipid metabolism
00565 Ether lipid metabolism
124398079 (pafah1b1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
smeo03036
]
124398079 (pafah1b1b)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
smeo04147
]
124398079 (pafah1b1b)
Chromosome and associated proteins [BR:
smeo03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
124398079 (pafah1b1b)
Exosome [BR:
smeo04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
124398079 (pafah1b1b)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
ANAPC4_WD40
NBCH_WD40
Nup160
LisH
eIF2A
Pox_A_type_inc
Nucleoporin_N
LisH_2
ARMC9_LisH
DUF2570
DUF6813
Motif
Other DBs
NCBI-GeneID:
124398079
NCBI-ProteinID:
XP_046724052
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All DBs
Position
15:21855384..21869914
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AA seq
410 aa
AA seq
DB search
MVLSQRQRDELNRAIADYLRSNGYEEAYSVFKKEAELDMNEELDKKYAGLLEKKWTSVIR
LQKKVMELESKLNEAKEEITLGGPMGQKRDPKEWIPRPPEKYALSGHRSPVTRVIFHPVF
SVMVSASEDATIKVWDYEAGDFERTLKGHTDSVQDISFDHAGKLLASCSADMTIKLWDFQ
GFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEVATGYCVKTFTGHREWVRMV
RPNQDGTLLASCSNDQTVRVWVTATKECKAELREHEHVVECISWAPESAHSTILEATGSE
NKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHPGGRFIVSCADDK
TLRTWDYKNKRCMKTLSAHEHFVTSMDFHKTSPYMVTGSVDQIVKVWECR
NT seq
1233 nt
NT seq
+upstream
nt +downstream
nt
atggtgctgtcacagaggcaacgagatgagctaaatcgagcgatagcagattacctccga
tcaaatggctacgaagaagcgtattccgtttttaagaaggaagcagagttagatatgaat
gaagaattagataagaagtatgcaggccttttggaaaagaaatggacctcagtcatcaga
ttacaaaagaaggtaatggagctggagtcaaagcttaacgaagcaaaagaggagatcact
ttaggagggcccatggggcagaagagggacccgaaagagtggatcccgcgaccccctgag
aagtacgcgctcagcgggcacaggagtcccgttacacgtgttatctttcaccctgtcttc
agcgtcatggtttctgcctcagaagacgccacaattaaggtgtgggactatgaagcagga
gacttcgagagaactctgaagggtcatacagactcggtgcaggacatttcctttgaccac
gctggaaagttgctggcctcttgctcagcagacatgaccatcaaactctgggacttccag
ggctttgagtgcatcaggaccatgcacggacacgaccataatgtgtcatcagtagccatc
atgcccaacggtgatcatattgtttctgcatcaagggataaaaccattaagatgtgggag
gtggcaactggttactgcgtgaagacgtttacgggccatcgggaatgggtgaggatggtg
cgacccaaccaggatggcacgctgttggccagctgctcaaacgaccagacggttcgagtg
tgggtcactgccaccaaggagtgcaaagctgagctgcgggagcatgagcatgtcgtggag
tgtatctcctgggctccagagagtgcccattctactatactggaggccactggctctgag
aacaaaaagagcggtaagcccgggcccttcttgctgtctgggtctcgagacaaaaccatt
aagatgtgggatgtcagtactggcatgtgccttatgacactggtgggccacgacaactgg
gtgcgtggtgtgctgttccacccaggtgggaggtttattgtaagctgtgccgatgacaag
accctgcgcacttgggactataagaacaagcgctgcatgaagaccttgagtgcccacgaa
cacttcgttacctctatggatttccacaagacctccccctacatggtgactggaagcgta
gatcaaatagttaaagtgtgggaatgccgctga
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