Silurus meridionalis (southern catfish): 124398159
Help
Entry
124398159 CDS
T08004
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1-A isoform X1
KO
K11648
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo03082
ATP-dependent chromatin remodeling
smeo03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
124398159
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
124398159
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
smeo01009
]
124398159
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
smeo03021
]
124398159
03036 Chromosome and associated proteins [BR:
smeo03036
]
124398159
Protein phosphatases and associated proteins [BR:
smeo01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
124398159
Transcription machinery [BR:
smeo03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
124398159
SWI/SNF complex
124398159
Chromosome and associated proteins [BR:
smeo03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
124398159
PBAF complex
124398159
SWI/SNF complex
124398159
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF5
INI1_DNA-bd
DUF1679
Motif
Other DBs
NCBI-GeneID:
124398159
NCBI-ProteinID:
XP_046724180
LinkDB
All DBs
Position
15:complement(2637492..2644577)
Genome browser
AA seq
377 aa
AA seq
DB search
MALSKTFGQKPIKFQLEEDGDFYMIGSEVGNYLRMFRGSLYKRYPSLWRRLASVEERKKI
AASSHDHGYTTLATSVTLLKASECEEIFEGNDEKYKAVSISTEPPAYLREQKAKRNSQWV
PTLPNSSHHLDAVPCSTTINRNRMGRDKKRTFPLCFDDHDPAVIHENASQTEVLVPIRLD
MEIDGQKLRDAFTWNMNEKLMTPEMFAEILCDDLDLNPLTFVPAIASAIRQQIESYPTDS
ILDEQTDQRVIIKLNIHVGNISLVDQFEWDMSEKENSPETFALKLCSELGLGGEFVTTIA
YSIRGQLSWHQRTYAFRSDFSENPLPTVEIAIRNTGDADQWCPLLETLTDAEMEKKIRDQ
DRNTRRMRRLANTAPAW
NT seq
1134 nt
NT seq
+upstream
nt +downstream
nt
atggcgttgagtaaaacattcggccaaaagccgattaaattccagcttgaagaagatggc
gatttttacatgataggttcagaggttggaaattatctgcgtatgttcagagggtcgttg
tataaaaggtacccgtcgctgtggcgcagactcgcttcggtagaggagaggaaaaagatt
gcggcgtcgtcacacgatcatggttacacaactttagccaccagtgtgactctgctgaag
gcgtctgagtgcgaagagatcttcgagggtaacgatgagaagtacaaggcagtgtccatc
agcacagaacctccagcctacctcagggagcagaaggccaagaggaacagtcagtgggtc
cccacgcttcccaacagttcccaccacttggacgctgtgccttgctccaccaccatcaac
cgaaaccgtatgggacgcgacaagaaaaggacctttcccttgtgttttgatgaccacgac
ccagcggtaatacatgaaaacgcctcacagacagaggttctggttccaatccgattggac
atggagatagacggccagaagctcagagacgccttcacctggaacatgaatgagaagctg
atgacgccagagatgtttgcagagatactgtgtgacgatttggacctgaacccactgacg
ttcgtcccagccatcgcctcggccatccggcagcagatcgagtcctacccaaccgacagc
attctggacgaacagacggatcagagagtcatcatcaagctgaacatccacgtgggaaac
atttccctggtggaccagtttgagtgggacatgtccgaaaaggagaactctccagaaacg
tttgcactgaagctgtgctctgagctcggcctcggaggagagtttgtcaccaccatcgcc
tatagcatccgcggccagctcagctggcatcagaggacgtacgccttcaggtctgatttc
agtgagaaccccttgccgactgtagagatcgccatccggaacacgggcgatgccgatcag
tggtgcccccttctggaaacgctgacggacgcagagatggaaaagaagatcagagatcag
gacagaaacacaaggcgcatgcggcggcttgccaacacggcgccggcctggtag
DBGET
integrated database retrieval system
