Silurus meridionalis (southern catfish): 124398194
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Entry
124398194 CDS
T08004
Symbol
setx
Name
(RefSeq) probable helicase senataxin
KO
K10706
ATP-dependent RNA/DNA helicase, senataxin [EC:
5.6.2.5
5.6.2.3
]
Organism
smeo
Silurus meridionalis (southern catfish)
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
smeo03021
]
124398194 (setx)
Enzymes [BR:
smeo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
124398194 (setx)
5.6.2.5 RNA 5'-3' helicase
124398194 (setx)
Transcription machinery [BR:
smeo03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
124398194 (setx)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_11
AAA_12
SEN1_N
AAA_19
UvrD-helicase
AAA_22
AAA_30
SLFN-g3_helicase
AAA_16
NPHP3_N
TIP49
TniB
Motif
Other DBs
NCBI-GeneID:
124398194
NCBI-ProteinID:
XP_046724233
LinkDB
All DBs
Position
15:complement(7178301..7211839)
Genome browser
AA seq
2266 aa
AA seq
DB search
METCVWCIQANESNDGDEAVKAVLQRYCAGKMTPQEMQDANKDLLYCLECVAVYHEARET
VPALHQRLWELETSRLLEVFREMLEVDVDDHDLYFVEEGHELPVSKFTAEEFLNQLRFAL
MEVLKYPYLLCHQELCQMVVKVLCKMEDMNNPLPVHERYQGIYLLMVHPNEKVRRWAIAT
ARSLGRVDRDNYYDLQEVFSCMFYIIDLGITVDFINVDDQYCSGKLNILPPHLYDSKNKK
HYWLGICMLLMQLDSQAMDSLLMGPEGQASIPQCIINTMNDCNKDDPGSDPFWPSLHCFL
VILDRLGSKIWGQIEPLDAFQAITKASSYMAEIENIRQKTAGTRVKVEPENDDDLISCSQ
IVYGCYATERTSRSSDWSSGNNDTSGNEIFEEMSCLVNVLQTEMGQGMRVYGSTFLWFIP
FVRSIMELNMLNSIYIGEVIHYLDNNINIKDLLYGRTHTCDKVTEFFIRILLDIIKLHLS
KGCMEMLSYFTHIWVDIVMQCATLSDDLYNARVQDRRGVSSLTSHYARGTHMPAIGIGAM
SHACIKLIRSILKEGGRTGTVSESAHFLDLINKHLRVSARGWNLPKPEYENLKKCLVKLV
KAISDRPVSNDVLCAPPTPPSDPSEHVISFTNSALQIPLQQPQTKDAEVGPSGPRDTVHF
IKDEPLFDDEECQIKCDEIKPKNEPHNPIPISENKPPFKISRLTADKEKMQEIKSKLNEG
QNLSRIQAIAKRRCETEDERGECSGLKKIEHSSGVSPQSSDRQSKVQDSASLSKCRKRDL
NDDDDQPLDVFRRQLKRSRKSAEKHYAQPLFSSDDESSNDKTAVENRVVPGPSLDFEFAK
SPGRVFDDCSDSQVFECETQEDIASAWDEPHIGVPIVTKKQKLGIESKACVIYDLEPIGT
QPISDQDIEQACVQVEAQIHQHQQPKEPTSSSMQVPPKPSSDEKSGFIQSKHSEKHTEKP
GRIDKVKQQLSRKPPITEAPIQKAKKHCRLLKAISLEPVKPCSSTMVASSSTASSSRGSS
VHSVVRSLSKPAIVPPKKDRVRVAPECAPELLGLKKKERKAFELSQRSSTIVAQLRSHGQ
NMNIEQQQKSKRVRQKKAVVKKGKKLLSSQDLQYYRQTAAVVKSNKCPVLDTFPKSKSES
MDEPSDEEDDYNFLPCSQPDPDRRIDSKMGVNQVNTSLSDNKKEVNNKVENPKSKELSSF
QTNAVCGSTAEGAEAIDENQDDNEWTYLTQNEPTDMELCSQMEQIEDYGKNLMIQGCARM
ESGNQPNLFEEKTNEPFNPGNKPQKSIEMSTNDQVFVKPSMSTEGPKKTKPSTTKIYTSS
SRSASLAKEIGKVSNPPPPAHVAKAKVARPPPAMPPPAMPLPPPKSTTQPEFRQPLPPRP
TLHAPNQASKSSLSVETPAPYVPSFKTYSRPETPVSIRTPTVARDRRSEHSPMFDPSYLK
QAILKWEYCMFENYTAFGTPKDLCPFPLKEVPTNFSNHKEYFEIFYPLLLINTFEEMANN
WLTDTSLNPEQEKRQLYPKEEDLVLLWLPANVGAYANDEPDSTETTVHFGCVSRYTVMSN
EGQPSTLKLIIQTRGNVSSVNTQPVRCEVIGSLISTLREFRALCMLQRSKMLDPVIKPDI
KYFAPCQDNLPSLDLPEYNGDQARAINCGVAMVKRKQNTPKILLIHGPPGTGKSKIIVGM
LHRLLCDGARPSMGRNTKSHRTRILLCAPSNAAIDNLMRKIIPAFKEKCLDISNPQGTCG
DINLVRLGSERTISEQLKGFSLDSQTRKALEKTQQRPDLEKEREKLDKLIELMSQDCAKT
DKKSAMFEQLNSKKMHYMKERQKLSRPLKEYRNKKQEEQSRLILEAHVICCTLSTSGSTL
LESAFRHLGHEPFSCVIVDEAGQAKETETLIPLLYRCQNLILVGDNMQLTPTVISKTAKD
LGYDQSLMARVWMDLNRQNTHLPSRVFLSVQYRMHPDICKFPSKYIYVNELKSDPETANK
LCSVSWPFEPYRVFDVTDGKESKERDSFSNLKEVKLVVQLYKMFGENHALRKEKQLMRVG
IITPYNAQKQLIMRALEQEPCKKFKKYIHVEVDTVDGFQGREIDCTIVSCVRASDENGSI
GFVANRQRMNVTITRAKYSLFILGHLRTLKENGDWGALIDDAGQRGIIIPASEPNFHEVT
IKVLKPNRLSRSYSHPPLQTSIPPHSDWQRDRMHNRPKDPRQPVDYHPRREQDRGNQGFT
RPRLPSHGVSDSRLHQSSAHFSRSTSERYPKNHYSTSSGSSRAHRR
NT seq
6801 nt
NT seq
+upstream
nt +downstream
nt
atggagacgtgcgtgtggtgtatccaagcaaatgaatccaatgatggcgatgaggccgtc
aaggcggtgctacagcgttactgcgccggtaagatgacgccacaagaaatgcaagatgct
aataaagacctcctgtattgcctggagtgtgtggcggtgtaccacgaagcaagagagacg
gtcccagcactgcaccagcgtctttgggaattggagacatctcggctgctcgaagtgttt
cgggaaatgttggaggtcgacgtggacgatcatgacctgtactttgtcgaagaaggccac
gagttaccggtctcaaagtttacagccgaagaatttctcaaccagctgagatttgcgctc
atggaagtgctgaaatatccataccttctgtgccaccaggagctctgtcaaatggtggta
aaagtgttatgcaaaatggaggatatgaataatcctctaccagtgcatgagcgctatcag
ggaatttacctgctcatggtgcacccaaacgaaaaggtgcgtcgctgggcaatagcgact
gccaggtctttgggcagagtggacagagataattattatgatcttcaggaggtcttctcc
tgcatgttctacatcattgatttaggaattactgtggacttcataaatgtggatgaccag
tactgctctggcaagctcaatattctacctccacatctctatgactccaaaaataagaag
cattactggctaggtatctgtatgttgctgatgcagctggactcgcaggccatggactct
ttgttaatggggccagaagggcaagccagcattcctcaatgcattatcaataccatgaat
gattgtaataaagatgaccctggatcagatcccttctggccctctttgcactgtttcttg
gtcattctagaccgtcttggctcgaagatttggggtcaaatagaaccactagatgctttc
caggccatcactaaagcaagcagctacatggctgaaattgaaaatatccgacagaaaact
gcagggacaagagtgaaggtagagcctgagaatgatgatgacctaatatcctgtagtcaa
attgtctatggctgctatgcaacggagcgaacaagtagatcatcagactggtcatctggc
aataatgacaccagtggcaatgagatttttgaagaaatgagctgcctggttaatgttttg
cagactgaaatgggtcaaggcatgcgtgtatacgggagcacctttctttggttcattcct
tttgttcgctcgatcatggagttgaacatgcttaatagcatctacatcggggaagttatt
cactatctggataacaacatcaacatcaaggatttgctctatgggcggacacacacatgc
gataaagtcacggagttcttcatccgcatccttttggatataattaagctgcacctaagt
aaaggctgcatggaaatgctgtcttattttacccatatatgggtagatatcgtaatgcag
tgtgccaccctttctgatgacctttataatgccagagttcaagatcggagaggggtcagt
tcacttacttcgcattatgctcgagggacccatatgccagcaattggtatcggcgcaatg
agtcacgcttgcattaagttgattcgctccatcttgaaagaagggggacgaacaggaaca
gtctcagagtctgcacattttctggacctaattaacaaacacttacgtgtctctgctaga
gggtggaatcttcccaaaccagaatatgagaatcttaagaaatgcttagtcaagcttgtg
aaagccatatccgacaggcctgtttcaaatgatgttttatgtgctccaccaacaccacca
tctgatccgtcagaacatgtcatttcctttacaaactccgcactgcaaatacctctgcag
cagccgcaaaccaaagacgcagaggttggtccaagtggcccgagagatacagttcatttt
attaaggatgaaccactgtttgatgatgaggaatgtcaaattaaatgtgacgaaattaaa
ccaaagaacgaacctcataatccaataccgatttcagaaaataaacctccttttaagata
agccggttaacagcagacaaggaaaaaatgcaggaaatcaaatcaaagttaaatgaaggt
cagaatctttccaggatacaagccattgctaagagaagatgtgagactgaggatgaacga
ggtgaatgcagtggcttgaaaaagattgaacattcttcaggtgtcagccctcagagctct
gatcgccaatctaaggtccaagactctgcctcacttagcaagtgcaggaaaagggattta
aacgacgatgacgaccagcctcttgatgttttcaggcgtcagctgaaaagatctcgaaag
tccgctgaaaagcattatgcccaaccgttgttcagcagtgatgatgaatcttcgaatgac
aaaacggcagtagaaaaccgggtagtacctggtccatctttggactttgaatttgctaag
agcccaggccgtgtttttgatgattgtagtgactcacaagtatttgagtgtgaaacccaa
gaagacattgcatctgcctgggatgagccgcacattggcgtcccaattgtgaccaaaaag
cagaaacttggcattgagtccaaagcatgtgttatttatgatctggagcccattgggact
caacccatctcagaccaagacattgagcaagcctgtgtgcaagtggaggctcaaatccat
cagcaccaacagccaaaggaaccaacttcatccagcatgcaagtgccaccaaaaccatct
tctgatgagaaatctggatttattcagtccaagcactctgaaaaacacactgaaaaacct
ggccgaattgataaagtcaagcaacagctgagcagaaaacctcctataactgaagcccca
attcagaaagccaagaaacattgcaggctacttaaagccatatctctagagcctgtaaaa
ccatgttcttccacaatggtagcttcatcctctactgcttcctcctcgagaggctcttct
gtgcactctgtcgtgcgttcactatccaaacctgctatagtgcctccaaaaaaagatcgg
gtacgtgttgcacccgaatgtgcaccagagcttttagggttgaaaaagaaggaaaggaaa
gcttttgagctttcccagcgttcctctaccatagtagctcaacttcgatcacatggccag
aatatgaatattgagcaacaacagaagtcaaaaagagtccgtcaaaagaaggccgttgtg
aagaaagggaagaagttgctttcgtcacaagatttgcaatactataggcagactgctgct
gttgtcaaatcaaataaatgtcctgtgctagatacctttcccaaatcaaaatctgaaagc
atggatgagccaagcgacgaggaagatgattacaatttccttccctgttctcagcccgac
cctgaccgaaggatagacagtaaaatgggtgtcaatcaggtcaatactagtttgtcagat
aacaaaaaagaagtaaataataaggtggagaatcctaaaagtaaggagttgagctccttt
caaaccaatgctgtttgtggttcaacggcagagggtgcagaagccatagatgaaaaccaa
gatgataatgaatggacataccttacccaaaacgaaccaacagacatggagttatgctcg
caaatggagcaaattgaggattatggcaagaatttaatgattcaaggctgtgcacgcatg
gaatctggcaaccaaccaaatctttttgaagaaaaaacgaatgagccttttaatcctggc
aacaagcctcagaaatccattgagatgtctacaaatgaccaagtgttcgtaaaacctagc
atgtcgacagagggtccgaaaaaaacaaagccttcgacgacgaaaatctacacatcaagt
tcccgcagtgcctctttggctaaagagattggaaaagtatcgaaccctccacctcctgct
catgttgctaaagccaaggttgcaagaccacccccggcaatgccacccccggcaatgcca
ctcccacctccgaaatccacaacacagcccgagtttcgccaacctctcccccctagaccc
accctgcatgctccgaatcaggcttccaagtcatcactttctgttgaaactcctgctccc
tatgtaccttcctttaaaacctattccagaccagaaacgcctgtatcaatacgaacacca
actgtggctcgagatcgaaggtctgaacattctccaatgttcgatccatcctacctgaag
caggcgattttaaagtgggagtactgcatgttcgagaactatacagcgtttgggacaccc
aaggacttgtgtccatttccccttaaggaagtgccaacaaatttctctaaccacaaggag
tacttcgaaatattttaccccctattgcttattaatacgtttgaggagatggccaataat
tggcttaccgataccagccttaatcctgagcaggagaagaggcagttgtatcctaaagaa
gaagaccttgtactcctctggctgccggcgaacgtaggagcatatgcgaacgacgaaccg
gattccacggagacgactgtccactttggatgcgtgtcgcgatacaccgtgatgagcaat
gaagggcagccctccactctgaaacttatcattcagactcgtggtaacgtgtcctctgtt
aacacccaacctgtacgctgtgaagtgattggctccctgatcagtacgctgcgggagttc
cgagcactgtgtatgctacagaggagcaagatgttggatccagtgatcaagccagacatc
aagtattttgcaccctgccaggacaacctcccaagcctagatttgcctgaatataatgga
gaccaggcccgagcaataaactgtggtgttgcgatggtgaaaagaaagcagaatacccca
aagatattgttaatacatgggccaccagggactggcaaaagcaaaatcatagttgggatg
ctgcacagacttctctgtgatggcgcgagaccttcgatgggtcgcaacaccaagtctcac
agaacgagaattctactctgcgctccatctaatgcagccattgacaacttgatgagaaaa
atcattcctgccttcaaagaaaagtgcttggacatcagtaatccacaaggcacctgtggt
gacatcaacctggtgcgccttgggagcgagaggacaatctctgagcagctgaaaggcttt
agtctcgacagccagaccaggaaagcattagagaagacgcaacaaaggcctgatttagaa
aaagagcgtgagaaactggacaagttgattgaattgatgtctcaggactgtgccaagacg
gacaagaaatcagccatgtttgaacagctgaattccaaaaagatgcattacatgaaggaa
aggcaaaaactcagcagaccactaaaggagtatcgtaataaaaagcaggaggagcagtca
cgtctcatacttgaggctcatgtgatctgctgcacgctgagcacaagtggcagtaccctc
cttgaatctgctttccggcaccttgggcacgaaccattcagctgcgtcattgtagatgag
gcgggacaagctaaagaaacagaaacattgatccctttgctttatcgatgccaaaacctg
atcctagtgggcgacaacatgcagctcacccccactgtcatatccaagacagccaaagac
ctgggctatgaccagtcactgatggctcgagtttggatggaccttaatcgccagaataca
cacctgccctctagagtcttccttagcgtccagtaccgcatgcacccagatatttgcaag
ttcccatcaaagtacatctacgtcaatgaactgaaaagtgaccctgagactgctaataag
ttgtgctcagtctcctggccgtttgagccctacagagtgtttgatgtgactgatggaaaa
gaaagcaaagagagagattcatttagtaacttgaaggaagtcaagctggtggtgcagctt
tataagatgtttggagagaaccatgccttgcgcaaagagaaacagctaatgcgtgttgga
atcatcactccatataacgcccagaaacagctcatcatgcgtgcccttgaacaggaaccg
tgcaagaaatttaaaaaatacatacacgtggaggtggacacggtggatgggttccaaggc
cgtgaaatcgactgcaccatcgtgtcttgtgtaagagccagcgatgaaaatggctctatc
gggtttgttgctaatcgtcagaggatgaacgtgacgataactagagcaaagtatagtttg
tttattctcggacatctccgcacgctcaaggagaatggcgattggggtgcactgatagat
gacgcagggcaacgtgggattataataccagcatcggagcccaactttcatgaggtcacg
attaaggtgctgaaaccaaatcgactctctcgtagttactcacaccctcctctccaaacc
tctatccccccccactctgattggcaaagagatcgaatgcacaatagacctaaagaccca
cgtcagccagtggattatcatccaaggagagagcaggaccgtggaaaccaaggttttact
cgccccaggctaccaagtcacggtgtttcagactctcggctacaccaaagctctgctcat
ttctctcgttcaacttcagaacgatatcccaaaaatcactattcgacctcttcagggtca
tccagggcacacaggagataa
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integrated database retrieval system
