Silurus meridionalis (southern catfish): 124398209
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Entry
124398209 CDS
T08004
Name
(RefSeq) skin secretory protein xP2-like isoform X1
KO
K13126
polyadenylate-binding protein
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo03015
mRNA surveillance pathway
smeo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
124398209
09123 Folding, sorting and degradation
03018 RNA degradation
124398209
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smeo03019
]
124398209
03041 Spliceosome [BR:
smeo03041
]
124398209
Messenger RNA biogenesis [BR:
smeo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
124398209
mRNA cycle factors
Stress granule specific factors
124398209
Spliceosome [BR:
smeo03041
]
Complex C
Other components
Complex C specific factors
124398209
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
RRM_5
RRM_RdRP1_2
RRM_MUD2_C
RRM_ACIN1
Motif
Other DBs
NCBI-GeneID:
124398209
NCBI-ProteinID:
XP_046724246
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All DBs
Position
15:21012655..21019042
Genome browser
AA seq
637 aa
AA seq
DB search
MNCKLSSLYVGDLHPEVTEHMLEEKFSPAGQIHSVWVCKNRNNGASFGYAYVNFYHRADA
ARALETLNYDLLMGKPMRIMWSQRDSTIRKSGIGNLFIKNLDLLTIDSMALFDLFSVFGK
VLSCKIVAYKTGTKGYGYVQFETQEAANLAKERLHGKLFNNHKVSVEHFKSREEREEHEE
HEELEDREEHEEHEAPPQVPAVKQSPVPPQVSAVQWSPALPQVPTVERSLAPAQVPAVEQ
SEAAAQVSAVELSPAPPQVSAMEESPAPHQVPAMKESPAPGQVKAVEQSPSPPSVPAVKQ
SPASPQVPAVEETPAPPQVPTVELSPAPPQVPAVEESPAPPQLPAVEPGPAQVPAVEQGP
AVPQVPTVEPNLAPAQVPAVEQSQAAAQVPTVEPSPAPPQVPAVEESPVPAQVSAVEQSP
ASPQGPAVEETPTSLQVPTVEQSPAPPHVPAVELSPPQVPAVKQSLAAAQVPTVEPSPDP
TQVPAVEESPASSQVPEMEESLAPAQVPAVEQSQAAAQVQTVEPSPGPPQVPTVEPCPAP
PQVPAIKQSPAQVPAVEQGPTPPQVIAVDKSPAPARVPGVEMSPAQVPAVEMSPALAKVS
AVEEKPNPPQIQSVEKSLSPPQGQNAVKVPSASVSEI
NT seq
1914 nt
NT seq
+upstream
nt +downstream
nt
atgaattgcaaactttcatcactctatgtgggtgatttgcaccctgaagtgacggagcat
atgctggaagaaaaattcagtcctgcaggccaaattcactctgtctgggtctgcaagaac
cggaacaatggtgcttcatttggctatgcatatgtaaacttttaccaccgggccgatgct
gcacgagcattggaaacacttaattatgatctcctcatgggaaagcccatgagaatcatg
tggtctcagagggattctaccataagaaagagtggcattggaaacttgttcatcaagaac
ttggatttgttgacaattgacagcatggccctttttgacctcttttcagtctttgggaaa
gtcctgtcatgcaagattgtagcttacaagacagggacaaaagggtacggctatgtccaa
tttgagactcaagaggcagcgaatttggcaaaggaaagactccatggcaaactcttcaac
aaccataaagtctctgttgaacactttaaatcgcgtgaggagcgtgaggagcatgaggag
catgaggagcttgaggatcgtgaagagcatgaggagcatgaggctccacctcaggttcca
gctgtaaaacagagtccagttccacctcaagtttcagctgtacaatggagtccagctcta
cctcaagttccaactgtagaacgaagtcttgctccagctcaagttccagctgtagaacag
agtgaagctgctgctcaagtttcagctgtagaactgagtccagctccacctcaagtttca
gctatggaagagagtccagctccacatcaagttccagctatgaaagagagtccagctcca
ggtcaagttaaagctgtagaacagagtccatctccaccttcagttccagctgtaaaacag
agtccagcttcacctcaagttccagctgtagaagagacgccagccccacctcaggttcca
acagtagaactgagtccagctccacctcaagttccagcagtggaagagagtccagctcca
cctcaacttccagctgtagaaccgggtccagctcaagttccagctgtagaacagggtcca
gctgtacctcaagttccaactgtagaaccaaatcttgctccagctcaagttccagctgta
gaacagagtcaagctgcagctcaagttccaactgtagaaccgagtccagctccacctcaa
gttccagctgtagaagagagtccagttccagctcaggtttcagctgtagaacagagtcca
gcttcacctcaaggtccagctgtagaagagacgccaacctcacttcaggttccaacagta
gaacagagtccagctccacctcatgttccagctgtagaactgagtccacctcaagttcca
gctgtaaaacagagtctagctgcagctcaagttccaactgtagaaccgagcccagatcca
actcaagttccagctgtagaagagagtccagcttcttctcaggttccagaaatggaagag
agtctagctccagctcaagttccagctgtagaacagagtcaagctgcagctcaagttcag
actgtagaaccgagtccaggcccacctcaggttccaacagtagaaccgtgtccagctcca
cctcaagttccagctataaaacagagtccagcgcaagttccagctgtagaacagggtcca
actccacctcaagttatagctgtggataagagtccagctccagctagagttccaggtgta
gaaatgagtccagctcaagttccagctgtagaaatgagtccagctttagctaaagtttca
gctgtagaagagaaaccaaatccacctcaaattcaatctgtggaaaagagtctatctcca
cctcaaggccaaaatgcagttaaagtgccttcagcatctgtgagtgaaatctag
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