Silurus meridionalis (southern catfish): 124398256
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Entry
124398256 CDS
T08004
Name
(RefSeq) short transient receptor potential channel 2-like
KO
K04965
transient receptor potential cation channel subfamily C member 2
Organism
smeo
Silurus meridionalis (southern catfish)
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
smeo04040
]
124398256
Ion channels [BR:
smeo04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
124398256
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Gene cluster
GFIT
Motif
Pfam:
XRCC1_N
TRP_2
Ion_trans
PKD_channel
Ank_2
zf-C2HC_2
Zn-C2H2_12
Motif
Other DBs
NCBI-GeneID:
124398256
NCBI-ProteinID:
XP_046724301
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All DBs
Position
15:complement(17655178..17669227)
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AA seq
1366 aa
AA seq
DB search
MMAPVRIQHVVSFTSEDPKHRVVNLCLGEEGSSPWLCGAADRSGLLKAELQLDRASTIAF
VDVGNHGSAFVQVDVGRSSWSIDHPYVTLLPTATLMSPADSRKGIGKHGVRMFKKVDFLP
QAAEESWDRVRVTCSQPFNKRNQFGLSFFRIRTADEHTDELSANQETDTSKNQSTPDKNW
AIKEWISSPSVQHTYFGQKTGERSPGDPLKDHQNLSRAERMVTAAQSIRCSLQKTSCNAL
ISSGERQEKTRYTQHSPVRAPQSRRRTSGTILEQADSTPKKTRCAKIDVSATKKKNSSFK
HSPDKSQKTASSPTRISQDYPESPETSCPICGVTFSPDYLPIHASSCLDSGSAEFSSVMD
GEPGSSFSFRPPSSPSTDELMVPCPLCSFRFPIDCIQQHASTCGDTVWLHIHCWSELNTT
RSGYRAFENDLNLCLKAQEGKMMMVCGMMEHLTAEQWREIVNKKMRFPPELINAIHEANV
SVIHSLLKTGDGIIRQLEDSEDRQWREALNLSIRLGNEESMVTLLHGVKFDFRQIHEALL
VAVDTNQPRIVKRLLDRLDQEKGNKMDVHSFNQAIFDHSIDDSQFAPGVTPLTLACQKDL
YEIVTMLTQKGHVIPWPHKVSCTCLECRNGRQYDLLKFSLSRINTYRGLASRAYLSITSE
DAMLSAFYLSRDLRKLSKREPEFKPQYLALEELCQEFAVELLGMCRNQSEVSTILNNCGI
NDEDTRDELEKHSFEEGIPNLARLRLAVNYNQKQFVAHPICQQVLSSIWCGNLSGWKGSR
TIWKLLVSLGIFFTMPLLCLIYWIAPKSKMGKILKIPVIKFILHSASYLWFLITLLVESI
ILEMYRDTSTTRHQTLLHNSIHMVWVVGFFWYECKEVWIEGLRSYFLDLWNCLDVMVLSM
YLASFSLRMVVLIKGYFLCQSQQSEMECLYFTDNARQDWHQEDPQILAELLFAVTSMLSF
TRLAYILPAQESLGTLQISMGKMIDDMIRFLFILMIIGTAFLCGINNIYVSYTESIYLGR
FNETFQFLFWTMFGVVNKEYVDMPDFVLAQFVGRILYGIFTLLIVIVLLNMFVAMITNSY
QKIEDDADVEWKFARSKLYLNYFREGLTMPVPFNIIPSPKAFFYLIRKLFCFCNYNSTPD
YPPMSSGSNETDEKVSYRNQVIRALVQRYIESARREFEETKRKDVGNRITGLSKVIGQLH
VDLKQINQTMLDIEDNRHDPSGRSTSSIIGKYIQGAKNNFRDFNSGMPTESKSKPLLANV
HNPKSEDVDEEIQDMVKSVEGKIEDEGVGAEIKEQEGEDQTGDGATVEEDRAGDESTDQS
VLEDETTMMEEGRANKRREESLTGSSSSEDTGFTSQYSEISASSPE
NT seq
4101 nt
NT seq
+upstream
nt +downstream
nt
atgatggcaccagttcgaattcaacatgtcgtctcgttcacctcagaggacccgaagcac
cgtgtggtaaacctgtgtttgggtgaggaagggagcagcccgtggttgtgcggtgcagca
gaccggagcggccttctgaaagcagagctgcagctggaccgggcttctaccatcgccttc
gtcgatgtgggaaaccatggctctgcgtttgttcaggtcgatgtgggtcgttcttcctgg
tctatcgatcatccttatgtcacactgcttcccacggcgaccctaatgagcccggccgat
tcacgaaaaggcataggaaagcacggtgtgcgcatgttcaaaaaagttgactttttgccc
caggctgctgaagagagttgggacagggtgagggtcacctgcagtcagccctttaacaag
cgcaaccaatttggcctgtctttctttcgtatccgcactgctgatgaacacacagatgag
ctttctgccaatcaggaaacagatacgagcaaaaatcagagtacacctgataaaaattgg
gcaataaaagagtggatctccagcccttctgtacaacacacctactttggccaaaagaca
ggagaaagatctccaggagatcccttaaaagatcatcagaatctgagcagggcagagcgc
atggtaacagccgcacagtcaatcaggtgctctctacaaaaaacctcttgcaatgcatta
atcagcagtggtgagagacaggagaagacccggtacacacagcatagcccagtcagggct
cctcaatcacgcaggagaacatcaggaacaatacttgagcaggcagactctactccaaag
aagaccagatgtgctaaaatagacgtttctgccactaagaagaaaaacagttcattcaaa
cacagccctgataaatctcaaaaaacagcatcatcgccaacaagaatcagtcaagattat
cctgaatctcctgagacttcatgcccaatatgtggagtgactttcagcccagactacttg
cccattcatgcctcttcctgtctggactctggttcagccgagttctccagtgtcatggac
ggagaacctgggtcatctttttcatttcgtccaccttctagtccaagcacagatgagctc
atggtgccgtgtcctctgtgctccttcagatttcctatagactgcatccaacagcatgcc
agtacctgtggtgacaccgtgtggttgcatatacactgttggagtgaactgaacacgact
cggtctggttacagagcttttgaaaatgatctcaacctttgtttgaaggctcaagaggga
aagatgatgatggtttgtggcatgatggagcatctcacggcagagcaatggcgcgagatt
gtgaacaaaaagatgcgctttcccccggagctcatcaacgccattcacgaggcgaacgtg
tctgtaattcatagcttgctgaagactggagacggcatcatccgccagttggaagactcg
gaagacaggcagtggagagaagctctgaacctgtccatccgcctgggcaacgaggagtcc
atggtcactctgctacatggagtcaagtttgattttcgacagatccacgaggctcttttg
gtggctgttgacactaaccagcctcgtattgtcaagcgcctcctcgaccgcctcgatcaa
gagaaaggcaacaagatggatgtgcactctttcaaccaggcaatttttgaccattccatt
gatgactctcagtttgccccgggggtgacgccattgacgctggcctgccaaaaggatcta
tatgaaattgtgaccatgctcacacagaagggccatgtcatcccatggcctcacaaggtc
tcctgtacttgtcttgagtgccggaacgggcgccaatatgacttgctcaagttctcacta
tcccgcattaacacctaccgtggccttgccagccgggcgtatttgtccatcacttctgag
gatgccatgttgagtgctttttatctaagccgggaccttcgcaaactctctaaaagagag
ccggagtttaagccgcagtaccttgcacttgaggagctgtgccaggagtttgctgtggaa
ttgctgggaatgtgtcggaatcaaagtgaggttagcactattctcaacaattgtgggatt
aatgatgaagacactagagatgagctggaaaaacactctttcgaagagggcataccaaac
ctggcccgattacgactcgctgtgaactacaaccagaaacagtttgtagcccatccgatc
tgccagcaggtcctttcatccatctggtgtggaaatttatcgggctggaaaggcagcagg
acaatttggaaactcctggtgtctctcgggatcttttttaccatgccgctcctctgcctc
atttactggattgcaccaaagtcaaagatgggaaagattttgaaaatcccagttatcaaa
ttcattcttcactctgcctcctacttgtggtttctcatcacactgctagtggagtccatt
atattggagatgtatcgggacacgtctacaaccaggcaccagaccctgctgcacaactcg
atccacatggtgtgggtggttggctttttctggtatgaatgtaaggaggtttggattgag
ggcctgaggagctacttcctggacttgtggaattgtctggatgtgatggtgctcagcatg
tatctggcctctttttctcttcgaatggttgttctgattaaaggctactttctgtgccag
tcacaacaaagtgaaatggagtgcttatactttacagataatgcacgtcaagattggcac
caggaggaccctcagatattagctgaattgctctttgctgtcaccagcatgctgagtttc
acacgtttggcctacatcctgcctgcacaagagtctctgggaactctgcagatctctatg
ggaaaaatgattgatgatatgatacggttcttgtttatactgatgatcattggtacggct
tttttgtgcggcatcaacaatatctacgtttcttataccgaatctatttaccttggaagg
tttaatgaaacgttccagttcctgttctggaccatgtttggtgtcgtcaataaggaatat
gtggatatgcctgattttgtgttggctcagtttgtgggcagaatcttgtatgggatcttc
acattactaatagtcattgtgttacttaacatgttcgtggctatgatcacaaactcttat
cagaagattgaggatgatgcggatgtggagtggaaatttgctcgctccaaactctacctg
aactacttcagagagggattgaccatgcctgtccccttcaacatcattccctcacctaaa
gctttcttctacctcatacgaaaactcttctgcttctgcaactataattctaccccggat
tatcctcctatgagctcagggtctaacgagacagatgagaaggtgtcgtaccgaaatcag
gtgatccgggctttagtacaacgttatattgaatctgccaggagggagtttgaagagacg
aagcgcaaagatgttggaaaccggatcacggggttgagtaaagttattggacaactgcat
gttgatttgaagcaaattaaccagacaatgttagacatagaggataatcgacatgatcct
tcaggacgaagcacttcttccatcatagggaagtacatccagggtgccaaaaacaacttt
cgtgactttaacagcggcatgcctactgaaagcaaaagcaaacctttgctggccaacgtc
cacaatccaaaatctgaagacgtagatgaggagatacaggacatggttaagagtgttgaa
ggtaagatagaggatgagggagtaggtgctgagatcaaagaacaggagggtgaagatcag
actggtgatggagcaacggtagaggaggacagagccggtgatgagagtactgatcaaagt
gtgcttgaagatgaaacgacgatgatggaggagggaagagccaacaaaagaagagaggaa
tcactcactggcagcagtagctccgaggacactggattcacatctcaatattcagaaatc
tctgccagcagtcctgagtaa
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