Silurus meridionalis (southern catfish): 124398340
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Entry
124398340 CDS
T08004
Symbol
col5a1
Name
(RefSeq) collagen alpha-1(XI) chain isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
124398340 (col5a1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
smeo00536
]
124398340 (col5a1)
Glycosaminoglycan binding proteins [BR:
smeo00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
124398340 (col5a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_1
Motif
Other DBs
NCBI-GeneID:
124398340
NCBI-ProteinID:
XP_046724409
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All DBs
Position
15:8870454..8947565
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AA seq
2021 aa
AA seq
DB search
MDNQIKWKAKRRLKGARLALTMLLLFASATTSSLAGPADLLKILDFPSLPDGVTKTTGFC
THRKSSKVPDVAYRVSKDAQLSAPTKQLYPSSVFPEDFSIVATVRPNKGSQAFLLSIYNE
QGMQQLGIEVGRSPVFLYEDHLGKPGPEDYPLFRGVNLADGKWHRVAISVHKQSVTLIVD
CKKQTTRKLARSLNPVIDTKGIVVFGTRILDEEVFEGDIQQLMIIADHRAAYDYCEHYSP
DCEVPAQEQPQNQDPNTDEYNTEDDTYYYEYPYYDDLDAEKNEESSVTPGRTIDSGRVDT
TITRETVVGGGTGHSVGSTSSSTSSKDTGTGSETYDEYDDHGYDTTYYDESTSSPGSSLT
ITSTGTGTGTDTGDDFDLPDAIDPDLGGDVKKHTITSIREGGRIHTSNTGGPDSSTGSGT
NIRIGSGSSTGSESSSGSSTGSASVSTSITGPGSVSTSSTGSSTSSSSVDNYDNYGYGVT
YEDEYTDGFVEGVDTAGGGSSSSTASVGAGSSSVGGESVSVGGGSVSVGGGSVSVGGSSV
SVGGGSVSVSSSAGGGGGGSASAGAGAGAGTAKIEGGEDGDYPDSFNEESITDLTDSDLD
KVYNDYKEYYGEGDDKNLPAETGIYQEEGSRGEKGQKGEPAIIEPGMLVEGPPGPEGPTG
LPGPPGTSGAPGSSGDPGERGPPGRPGLPGADGLPGPPGTVLMLPFRMSTGGDGHKGPAV
SAQEAQMQAIMQQARLAMRGPTGPMGLTGRPGPQGPPGVIGIKGESGEQGHQGPRGLMGS
IGPPGKPGRRGRPGADGARGMPGQTGPKGDRGFDGLAGLPGEKGHRGESGPQGPPGPSGE
DGERGDDGEVGPRGLPGEPGPRGLLGPKGPQGPQGSPGVTGMDGHPGPKGNIGPQGEPGP
PGQQGNPGAQGLPGPQGAIGPPGEKGPTGKPGLPGMPGADGPPGHPGKEGPSGEKGQMGP
SGAQGPIGYPGPRGVKGADGVRGLKGNKGEKGEDGFPGFKGDMGIKGDRGEGGPAGPRGE
DGPEGPKGRSGLPGDAGPLGPNGEKGKLGVPGLPGYPGRQGPKGSQGFQGFAGANGEKGT
RGIAGKAGPRGQRGPTGPRGERGPRGPTGKAGPKGNSGSDGPPGPPGERGLPGPQGSTGF
PGPKGPPGPAGKDGLPGHPGQRGETGFQGKTGPPGPPGVLGPQGPTGETGPMGERGHPGP
PGPPGEQGLPGPAGKEGAKGDPGPAGPAGKDGPQGLRGFPGERGLPGPVGTAGLKGSEGP
PGPPGPAGSPGERGPAGPTGPTGPPGRPGPQGPPGPAGEKGGPGEKGPQGPAGRDGIQGP
VGLPGPAGPLGPPGEDGDKGEIGEPGQKGGKGDKGEQGPPGPTGPQGPIGAPGPAGADGE
PGPRGQQGLFGQKGDEGPRGFPGPPGPVGLQGLPGPPGEKGETGDVGHMGPPGPPGPRGP
SGPPGADGPQGPSGGIGNPGAVGEKGDPGEPGEPGLQGDVGPPGPRGERGEKGESGPAGT
AGPPGPKGPPGDDGPKGSPGPSGFPGDPGPPGEPGPPGLDGPPGDKGDDGESGQPGSPGP
TGESGPTGPPGKRGPPGVAGPEGRQGEKGAKGEPGLEGPQGKTGPVGPQGAPGKPGSEGL
RGIPGPVGEQGLPGSPGPDGPPGPMGPPGLPGLKGDTGVKGEKGHPGLIGLIGPPGEQGE
KGDRGLPGPQGAHGPKGDNGIAGPAGPLGPIGPPGLPGPPGPKGAKGSSGQTGPKGESGV
PGPPGPPGPPGDVIHPLPILSSPKRARRNIDASQMADDAADANYKDYEDGMEEIFGSLNS
LKQEIEQMKHPLGTRANPARTCKDLQLCHPDFPDGEYWIDPNQGCSRDSFKVYCNFTAGG
ESCIFPDKKSEGTRLTSWVKETPGSWYSEFKRGKLLSYMDAEGNPIGVVQMTFLRLLSAS
ARQNLTYNCYQSVAWHDQDLDSHDKAIRFLGSNDEEMSHDNNPYINAIIDGCALKKGYEK
TILEINTPKVEQIPYVDIMFNDFGGATQKFGFEVGPACFIG
NT seq
6066 nt
NT seq
+upstream
nt +downstream
nt
atggataaccaaatcaagtggaaagcgaaacggaggcttaagggcgcgcggctagcttta
acgatgctcttgctcttcgcctcagcaaccacgtcgtcgctcgctggaccagctgacctt
ctgaagattttagattttccgagtttgcctgatggtgtaacaaaaactacaggcttctgc
acacacaggaagtcatcgaaagtgcctgatgtagcttacagagtaagcaaagatgctcag
cttagtgctcctaccaaacagctctacccatcttcagtttttccagaagacttctcaatc
gtggcaactgtgcgaccaaataagggcagccaggcattcctgctctccatctataatgaa
cagggcatgcagcagctgggtattgaggtgggccgttcacctgtcttcctctatgaggac
caccttggaaagccaggccctgaggactaccctctcttcagaggagtaaacctggctgac
ggaaagtggcaccgtgtagcgattagcgttcataagcagagtgttacgctgatcgtagac
tgtaagaagcagacaacacgcaagttggcacgaagcctgaaccccgtcattgacactaaa
ggcattgtagtgtttggtacacgcatactggatgaagaagtttttgagggtgatattcag
cagctgatgattattgcagaccatcgtgctgcatatgactactgtgaacattatagccca
gactgtgaggttcctgcccaggagcagccacaaaaccaggacccaaacacagacgaatat
aacactgaagacgacacctactattatgagtatccatactatgatgacttggatgcagag
aagaacgaggagtcgtcagtcacccccggcaggaccattgactcaggccgagtcgacaca
accataacaagggaaaccgtagtaggtggtggaacaggacattctgttggctccactagc
agttctactagtagcaaggacacaggaactggcagtgagacatatgatgaatatgatgat
catgggtatgatacaacatactatgacgagtcaacttcctcgcctggcagctcactaaca
atcacaagcacaggcacaggcacaggcacagatactggggatgacttcgacctgccagat
gcaatagatcctgatctgggtggagatgtgaagaaacacaccatcacttcaatcagagaa
ggaggacgcatccacacatccaacactggtggtcctgattctagcactgggtctggaaca
aacatcagaattggttcaggttctagcaccggttcagaatccagctctggttcaagcaca
ggatctgcttctgtttctacttctattacaggccctggatctgtttccacatccagtaca
ggatcaagtaccagctctagctcagtggataattatgataactatggctatggggtgacc
tatgaggatgagtacactgatggttttgttgagggtgtggacactgctggaggaggaagc
agcagcagtaccgcatctgtcggggccggatcttcttctgttgggggtgaatctgtttct
gttgggggcggatctgtttctgttgggggcggatcagtctcagttgggggcagctctgtt
tctgttggaggtggttcagtctctgttagtagttcggctggaggtggtggtggtggatct
gctagtgctggggctggtgcaggggcaggaacagccaagatagaaggtggcgaggatgga
gattatcccgattcatttaacgaggagtccattacagatctcactgactctgacctggac
aaggtttacaacgattacaaagaatattatggtgaaggcgatgacaaaaacttgcctgcc
gagactggaatttaccaggaggaaggatctagaggagagaaggggcagaaaggagagcca
gccatcattgaaccaggaatgttggtggaaggcccccctggacctgagggcccaactggt
cttcctggtcctccaggaacatcaggagccccgggctcttctggagaccctggagagagg
ggtcctcctggtcgccctggtcttcctggagctgatggactgccaggacctccagggact
gtcctgatgctgcctttccggatgagcacaggaggagatggccataaaggacctgcagtt
tctgcccaagaagctcagatgcaggctatcatgcagcaggccaggctggcaatgagaggt
ccaactggtcctatgggtttaactggtcgtcctgggcctcagggtcctcctggtgttatt
ggaattaaaggtgaatctggggagcagggacatcagggtcctcgtggtttaatgggttcc
atcggccctcctggaaagcctggtagaagaggtcgtcctggagcagatggagccagaggc
atgcctggacaaactggaccaaagggagacagaggttttgatggtctggctggattacct
ggagaaaagggacacaggggtgagtcaggacctcaaggacccccaggaccctcaggagag
gatggagaaagaggagatgatggtgaggtcggacctaggggtctacctggcgaaccaggt
cctcgtggtttgttaggacccaaaggaccccagggaccgcagggatctcctggagtgaca
ggaatggatggtcatcctggtccaaaaggaaacattggtcctcaaggtgagcctggtcct
ccaggacagcaaggcaaccctggtgctcagggacttccaggacctcaaggagccatcgga
cctccaggagagaagggtccaacaggaaaaccaggattaccaggcatgccaggagctgat
ggacctccgggtcacccagggaaggaaggcccatctggtgaaaaaggtcaaatgggacca
tctggagcacaaggaccaatcggatatcctggccctcgaggtgtgaagggtgctgatgga
gttcgtgggctaaaaggaaacaagggtgaaaagggagaagatggcttccctggatttaaa
ggagatatgggtatcaagggtgatcggggtgagggtggacctgcaggacccagaggagag
gatggtcctgaaggacctaaaggacgttctggccttcctggagatgccggacctcttgga
ccaaatggagagaagggcaagcttggtgttccaggattgccaggatatcctggaaggcaa
gggccaaagggttctcaaggattccaaggcttcgcaggagccaatggagaaaagggaaca
aggggaatagctggaaaggctggtccacgaggacagcgaggacctactggccctcgagga
gaaagaggccctaggggacccacaggaaaagcaggaccaaagggcaactcaggaagtgat
ggaccccctggaccacctggtgaacggggtttgccaggacctcagggatcaactggattc
cctggacctaaagggcctcctggaccagctggaaaagacggactgcccgggcaccctggc
cagagaggagagacaggtttccaaggaaagactggaccacccggacctccaggtgtgctg
ggacctcagggaccaacaggtgaaactggaccaatgggagagcgtggccatcctggacct
ccaggaccaccaggtgaacaaggtctgccaggacctgctggtaaagaaggagctaaggga
gatccaggtcctgcagggccagctggtaaagatggaccccaaggactgcgaggttttcct
ggagagagagggttacctgggcctgttggaactgcaggtttgaaagggagtgaaggacca
ccgggtccacctgggcctgctggttcacctggtgagcgaggacctgctggtccaacaggt
cccactggaccacctggacgcccaggacctcagggacccccagggcctgctggagagaaa
ggtggaccaggagaaaaaggacctcaaggccctgctggtagagatggtattcagggtcct
gttggtttgcctggtcctgctggacctcttggacctccaggagaagatggagataagggt
gagattggtgagcctggtcagaaaggtggcaaaggagataaaggagaacagggtcctcct
gggccaaccggtccccaaggaccaattggtgcacctggtcctgctggagctgatggagag
cctggtccaagaggacagcagggcttgtttgggcagaaaggagatgagggaccgcgagga
ttccctgggccaccaggacctgttggccttcagggtttgcctggacctcctggtgagaaa
ggagaaactggagacgttggtcatatgggtccacctggtcctccaggtccccgaggcccc
tctggacccccaggagctgatggaccccagggaccctctggaggcattggaaaccctgga
gctgtgggagagaagggagacccaggtgagcctggagagcccggtttgcaaggcgacgtt
ggtcctccgggaccaagaggagagcgaggagagaaaggagaatctggtcctgctggaact
gctggtccaccaggacctaagggccctcctggtgatgatggtcccaaaggaagtccaggt
ccaagtggttttcctggtgatcctggacctcctggagagcctggcccacctggtttggat
ggtcctcctggtgacaaaggtgatgatggagagtctggtcagcctggatctccaggacca
actggtgaatctggaccaactggacctccaggaaaaagaggtcctccaggggtggcaggg
cctgaaggacggcagggagagaaaggagctaagggtgagcctggtctcgagggtccacag
ggtaagacaggtcctgttggacctcaaggtgctcctggcaagcctggatccgaaggatta
cgaggaattcctggcccagtaggagaacaaggtctgcctggatctcctggacctgatgga
cccccaggacctatgggtcctcctggattgcctggactaaaaggagacactggagttaaa
ggagaaaagggtcatccaggtctgattggtttgattgggccccctggagagcagggagaa
aaaggagacagaggactgccaggaccacagggagcacatggtcctaaaggagacaatggt
attgctggacctgctggacctctgggacccattgggcctcctggattgcctggtccccct
ggacctaaaggtgctaaaggatcatcaggtcagacaggaccaaaaggagaatcaggagta
ccgggacctccaggaccaccgggtccaccaggtgatgtcatccacccactgcccattctt
tcaagtccaaagagagcacggcggaacatcgatgctagccaaatggcagatgatgcagct
gatgccaactacaaggattatgaggatggtatggaggagatatttggctcgctcaactct
cttaaacaggagattgaacaaatgaagcacccactaggcaccagggccaacccagcacgt
acctgtaaagacctgcaactctgccaccctgacttccctgatggagagtactggattgat
ccaaaccagggctgctcacgagattctttcaaagtttactgcaacttcacagctggagga
gagagctgtattttcccagataagaaaagtgaaggaactaggctaacttcctgggtgaag
gagactccaggttcctggtacagtgaattcaaacggggtaaactgctctcttacatggac
gctgagggcaatcctattggtgtggtccaaatgacattcctacgcttgctaagtgcctcc
gcacggcagaacctcacgtataactgctaccagtctgtagcctggcatgaccaggacctg
gactctcatgacaaggccatccgcttcctgggctccaatgatgaagagatgtcccatgac
aacaatccatacattaatgcaatcattgatggatgtgcgttgaaaaaaggatatgaaaag
actattctagagatcaacacaccaaaggtggagcagataccatatgttgacatcatgttc
aacgatttcggtggagcaacacagaagtttggctttgaggttggcccggcctgctttatt
ggctaa
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