Silurus meridionalis (southern catfish): 124398364
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Entry
124398364 CDS
T08004
Symbol
atg4a
Name
(RefSeq) LOW QUALITY PROTEIN: cysteine protease ATG4A
KO
K08342
cysteine protease ATG4 [EC:3.4.22.-]
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo04136
Autophagy - other
smeo04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
124398364 (atg4a)
04136 Autophagy - other
124398364 (atg4a)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
smeo01002
]
124398364 (atg4a)
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
smeo04131
]
124398364 (atg4a)
03029 Mitochondrial biogenesis [BR:
smeo03029
]
124398364 (atg4a)
Peptidases and inhibitors [BR:
smeo01002
]
Cysteine peptidases
Family C54: Aut2 peptidase family
124398364 (atg4a)
Membrane trafficking [BR:
smeo04131
]
Autophagy
Autophagosome formation proteins
Atg8 conjugation proteins
124398364 (atg4a)
Mitochondrial biogenesis [BR:
smeo03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
124398364 (atg4a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_C54
HVO_2928_N
Motif
Other DBs
NCBI-GeneID:
124398364
NCBI-ProteinID:
XP_046724459
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All DBs
Position
15:complement(24410725..24421072)
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AA seq
414 aa
AA seq
DB search
MEAVLAKYENQINVFSEFLEDLPDTDDPVWILGESYNVKTGKSALLSDVRSRLWFTYRKK
FSPIGGTGPSADTGWGCMLRCGQMILAQALICSHLGRKWRWESESLQPAAYRRILHCFLD
RKDSCYSIHQMAQMGVGEGKSVGEWYGPNTVAQVLRKLALFDDWSSLAVYVSMDNTVVIE
DIKKQCHQKVRSSRCVWGEAEPPPSGETLSSGHTLTDNSEQRQAPSPISHSLHSLDWKPL
LLLIPLRMGINNINPIYIQALKECFKMPQSCGVLGGKPNLAYYFIGFIDDELIYLDPHTT
QCAVDSETDLRVEDQTXHSQRSPHRMKITSLDPSVALGFFCKSEEDFDTWCNQVQQEILK
KRNLRMFELVEKHPSHWPPFIPPTKPEVQTTGAEFIESTDKLFESEEEFEILSV
NT seq
1245 nt
NT seq
+upstream
nt +downstream
nt
atggaggcagttttagccaagtatgaaaaccagatcaacgtgttctctgagtttttagaa
gatctaccagatactgacgatccggtgtggattttaggagaatcatataatgttaaaaca
ggaaagtcagcacttctgtcggatgtgcgttcacggctgtggttcacgtacaggaaaaag
ttcagtcctatcggaggaaccggtccatccgcagacacgggttggggctgcatgctgcgc
tgtggacagatgatcctggcacaagctctcatctgcagccatcttggacgaaagtggcgt
tgggagagtgagagccttcaacctgcggcgtaccggcgcatcctgcactgcttcctggac
cgaaaagatagctgctattcaattcaccagatggctcagatgggggtgggtgagggtaaa
tcggttggagaatggtatggtccaaacacagtagcacaagtcctcaggaaactcgcatta
tttgatgattggagttcattagctgtgtatgtgtccatggacaacaccgtagtgatcgaa
gacatcaaaaagcagtgtcatcagaaagtgaggtccagtcggtgtgtgtggggagaagca
gaacctcctccatcaggtgagacgttgtcatcaggacacactttgacggacaactcggag
cagcgccaggctccgtctcccatctcccattccctgcattccctagactggaagcctctg
ctgctgctcatcccactccgcatgggcatcaacaacatcaaccccatctacatccaggcc
ctgaaggaatgttttaagatgcctcagtcatgtggagttcttggtggaaaacccaacctg
gcttattacttcattggttttatagatgatgagctgatatatttggatcctcacaccact
cagtgtgctgtagactctgagacggacctcagggtggaggatcagaccnttcatagtcag
aggagtcctcatcgcatgaagatcaccagcctcgacccttctgtagctctgggcttcttc
tgtaagagtgaggaggactttgacacctggtgtaatcaggtccagcaggaaattctgaag
aaacggaacttgcggatgtttgagctggtagagaaacatccatctcactggccaccattc
attcctccaactaaacctgaggttcagaccacaggagcagaattcatcgagtccacagat
aaactgtttgagtctgaggaggagtttgagatcctgagtgtttga
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