Silurus meridionalis (southern catfish): 124398416
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Entry
124398416 CDS
T08004
Symbol
rbm22
Name
(RefSeq) pre-mRNA-splicing factor RBM22
KO
K12872
pre-mRNA-splicing factor RBM22/SLT11
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124398416 (rbm22)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
smeo03041
]
124398416 (rbm22)
Spliceosome [BR:
smeo03041
]
Complex B
Other components
Prp19-related factors
124398416 (rbm22)
Complex C
124398416 (rbm22)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
STL11_N
zf-CCCH_RBM22
RRM_1
RRM_occluded
zf_CCCH_4
Torus
Nup35_RRM_2
zf-CCCH_2
zf-CCCH_4
zf-CCCH
RRM_3
RRM_YTH1
zf-CCCH_10
zf-CCCH_PARP12
Motif
Other DBs
NCBI-GeneID:
124398416
NCBI-ProteinID:
XP_046724562
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Position
15:complement(20918750..20925870)
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AA seq
426 aa
AA seq
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MATSLGSNTYNRQNWEDSDFPILCQTCLGENPYIRMTKEKYGKECKICARPFTVFRWCPG
VRMRFKKTEVCQTCSKMKNVCQTCLLDLEFGLPIQVRDTGLSVKDDMPRSDVNKEYYTQN
MEREIANSEGTRPVGALGKAPGSSDMLLKLARTTPYYKRNRPHICSFWVKGECRRGEECP
YRHEKPTDPDDPLADQNIKDRYYGINDPVANKLLKRASTMPRLDPPEDKSITTLYIGGLA
DTITDSELRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEMAAEKSFNKLIIHGHRLNV
KWGRSQAARGKDGEKEGVTESGIRLDPVPGLPGALPPPPVSTDDISANYFNLAPTSGPAV
MNLGIPPPPGVAMPPPPGFAPPMYPSMDPMAPPMPPPMVMRPPGQVHYPSQDPLRMGAHA
SRHGGS
NT seq
1281 nt
NT seq
+upstream
nt +downstream
nt
atggcgacttccttgggctccaacacgtacaacagacagaactgggaggattctgacttt
cctattctctgtcaaacatgcttgggagaaaatccatacatccgcatgactaaagaaaag
tatggcaaagagtgcaagatctgtgcccgtcccttcactgtgttccgctggtgtcccggt
gtcaggatgcgctttaagaagacggaagtgtgtcagacctgcagtaagatgaaaaacgtt
tgtcagacctgcctgctggatctggaatttggtttacccatccaggtcagagacacaggg
ctgtccgttaaagatgacatgccgagatcggacgtcaacaaagagtactacacccagaac
atggagcgagagattgccaactcagaaggaacgcggccagtaggtgcgctcggtaaagcc
cctggatccagcgacatgctcttgaagcttgctcgcaccactccttactacaagaggaac
agacctcacatctgctctttctgggtgaaaggagagtgccgtaggggagaagagtgtcca
tacaggcacgagaagcccacagatcccgacgacccgttggctgatcagaacattaaggac
cgctactacggcattaacgacccggtggctaataagctgctgaagcgagcctccacaatg
ccaagattagacccacctgaggacaagtccataaccacactgtacatcggaggcctggcg
gacaccataacggattccgagctcaggaaccatttttaccagtttggcgagatccgtacc
atcaccgtagtgcagaggcagcagtgcgccttcatccagttcgccacgcgtcaggctgct
gagatggccgcggagaaatccttcaacaagctcatcattcacggccatcgcctcaatgtc
aagtggggcaggtcccaagcagcacgaggaaaagatggagaaaaggaaggagtgaccgag
agtggaattcgactggatcctgtccctggcctccctggagcattgcctccaccacccgtc
tccaccgatgacatctcggccaactatttcaacttggcgcctacctccggtcctgcagtc
atgaatttaggaatcccccctccccctggagtagccatgcctcctcctccaggttttgcc
ccccctatgtacccctctatggatcctatggccccgcctatgccaccccctatggtcatg
aggcctccaggccaggtgcattatccttcccaggatcctctacgtatgggggcccacgcc
agtcgccacggaggctcctag
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