Silurus meridionalis (southern catfish): 124398618
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Entry
124398618 CDS
T08004
Symbol
itga5
Name
(RefSeq) integrin alpha-5
KO
K06484
integrin alpha 5
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo03266
Virion - Herpesvirus
smeo04145
Phagosome
smeo04510
Focal adhesion
smeo04512
ECM-receptor interaction
smeo04810
Regulation of actin cytoskeleton
smeo04820
Cytoskeleton in muscle cells
smeo05100
Bacterial invasion of epithelial cells
smeo05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03266 Virion - Herpesvirus
124398618 (itga5)
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
124398618 (itga5)
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
124398618 (itga5)
09144 Cellular community - eukaryotes
04510 Focal adhesion
124398618 (itga5)
09142 Cell motility
04820 Cytoskeleton in muscle cells
124398618 (itga5)
04810 Regulation of actin cytoskeleton
124398618 (itga5)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
124398618 (itga5)
09171 Infectious disease: bacterial
05100 Bacterial invasion of epithelial cells
124398618 (itga5)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
smeo04147
]
124398618 (itga5)
04515 Cell adhesion molecules [BR:
smeo04515
]
124398618 (itga5)
04090 CD molecules [BR:
smeo04090
]
124398618 (itga5)
Exosome [BR:
smeo04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
124398618 (itga5)
Cell adhesion molecules [BR:
smeo04515
]
Integrins
Integrin alpha subunits
124398618 (itga5)
CD molecules [BR:
smeo04090
]
Proteins
124398618 (itga5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Integrin_A_Ig_3
Integrin_A_Ig_2
Integrin_A_Ig_1
FG-GAP
FG-GAP_3
ITGAX-like_Ig_3
DctQ
Motif
Other DBs
NCBI-GeneID:
124398618
NCBI-ProteinID:
XP_046724762
LinkDB
All DBs
Position
16:10203007..10247235
Genome browser
AA seq
1045 aa
AA seq
DB search
MGSKRQRSSKVATLFHMSCLLFSTCLFPWTIAFNLDVENPSIYTGPAGSYFGYSVDFYRT
QSTRDASIIIGAPKANTSQPDIKEGGSVFYCPWTHNQSDCHSIEFDRQGDLNVKINNVET
KAEFKSHQWFGATVRAHEDSVLACAPLYSWRTKQDIPESDVTGSCYLSINNFTKFVEYAP
CRTEFHGMKGQGYCQGGFSADFTKDGKVVIGGPGSYFWQGQLISAVKEEIIKAYYPGYFL
TSVAGQIQTKQKKEINFDDSYMGYSVAVGEFNGDDDEDFVTGVPRGVLLHGQVSILNGSL
ETMKTFIGEQMGSYFGYAVAATDINNDGLTDLLVGAPMFMVRDSDGRLEELGRVYVYLQT
GPLELAPHLPHLTGNQIFSRFGSSITALGDLNQDGFNDIAISSPFGGKDEQGLVFIYNGY
AKGLKEKPSQVISGQWSSAAFPASFGYTMKGGKDLDHNGYPDLIVGAFGADKAVLYRSRP
IVNTSATLVVYPTMINPEEKTCAINSGNRTIHVSCVNLSFCLSANGKHLPEDLVFNVEVQ
LDQMKQKGAVRRALFLNSHQASLQMKLTVPTDSKVCHETKIYLRDEKEFRDKLSSIFITL
NFSLDAQAPADRHGLWPIINYQTTELIEQKAQILLDCGEDNICVPDLKLSVNGDRKVVYM
GDDNALTLTFNARNDGGGAYEAELYVVLPSEADYSGIARNNESLTQLTCSYETENQTRYL
ICDLGNPMKSGANLWAGLRFTVPRLQNSQKTVQFDLQIRSKNENNSQSQVVPYRLEVVVK
ADVILQGVSLPDKVFFPPPKWKVTKNVAMEQDIGPAVEHIYELVNNGPSRISHTHLQLKC
PMKLHVQRFMYPLEIIPVGPINCTTYNVVNPMNIKLQQSTEQPPLLTHQLEKRETHRGEL
AELTNLSCSSVECWTLQCNVGVLEKGTSAILRVRSRVWGETFIMKKYKNFILECVASYVV
EKMPYSILPKEVPSGSRVVTTSVVWNKPDSQYGVPLWIIILAILAGLLLLALLIYVLYKL
GFFKRTPYGTAMEKAQLKPQAASEA
NT seq
3138 nt
NT seq
+upstream
nt +downstream
nt
atgggttcgaaaaggcaacgttcctctaaggtggcaactttattccacatgagctgttta
cttttcagcacatgcctttttccatggacaatcgcgttcaacttagatgtagaaaacccg
tccatatacacaggacccgcaggcagttattttggttattctgtggacttttataggaca
cagtcaacacgagatgcaagtataataattggagcaccaaaagccaacaccagccagcca
gacatcaaagaaggaggctcagtgttctactgtccatggactcataaccagtctgactgt
cacagcatagagtttgaccgacaaggagatcttaatgtgaagatcaataatgttgaaact
aaagcggagttcaaatcccaccagtggtttggagcaactgtacgtgcacatgaagactct
gtcttggcttgtgcccctctttactcctggagaaccaaacaggacatccccgagtccgat
gtcaccggctcctgctacctatcgattaataacttcaccaaatttgtggagtatgctccc
tgccgcacagaattccatggaatgaaaggacaaggatattgtcaaggtggattcagtgct
gatttcaccaaggatgggaaggtagtgattggaggaccaggcagctatttttggcaaggg
cagcttatctctgctgtgaaagaggaaatcatcaaggcctactatccagggtatttcctc
acatcagtggcaggccagattcagaccaagcagaaaaaagagataaactttgatgacagc
tacatgggttactctgttgcagtaggagaatttaacggagatgatgatgaagactttgtg
acaggagtccccagaggtgtgcttttgcatggccaggtgtccattcttaatggctctttg
gagaccatgaaaacctttattggtgaacagatgggctcctacttcggctatgccgtggca
gctacagacataaacaatgatggacttacagacttgttggttggtgctcccatgttcatg
gtgcgtgactcagatgggaggttggaggaattagggagagtgtatgtgtatctacaaacg
ggtccattggagcttgcacctcacttacctcaccttactggcaaccaaattttcagtcgg
tttggcagctctattacagctctgggagatctcaaccaggatggctttaatgacattgca
atcagtagtccatttggtgggaaagatgaacagggattggtattcatctataacggttat
gcaaagggactcaaggagaagccctctcaggtgatttctggccagtggtcatcagctgcc
tttcctgccagttttggctataccatgaaaggaggaaaagatttggatcacaatggctac
ccagaccttattgttggagcttttggagctgacaaagcagttctttacagatcccgcccg
attgttaatacaagtgccaccttagttgtgtacccaacaatgattaatcctgaggagaag
acctgcgccataaacagtggaaaccgaaccatacatgtttcttgtgtcaacttgagcttc
tgcctttcagccaatggaaagcaccttccagaagatctagtgtttaatgtagaggttcag
ctggaccagatgaaacaaaagggagctgttcgtagggctttgtttttgaactctcatcag
gccagtttgcagatgaagctaacagttcccactgactccaaggtctgccatgagaccaaa
atctacctgagggatgaaaaagagtttcgggataagctctcctccatctttatcaccctc
aacttcagtctggatgcacaggctcctgctgaccgacacggcctctggccaatcatcaac
taccagaccactgagctaattgaacagaaggcccaaatattattggactgtggagaagac
aacatttgtgtccctgacctgaagctttctgtaaatggtgacaggaaagttgtgtacatg
ggggatgacaatgcactaaccctgactttcaatgctcggaatgatggaggtggagcttat
gaagccgaactctatgttgtacttccttcggaggcggactacagtggaattgcccgcaat
aatgagagtctgactcagctgacatgcagctatgagacagagaaccagacgcgctatctc
atttgtgacctgggaaatcccatgaagtctggggctaatctgtgggcaggtctacgtttc
accgtgcctcggctacaaaattcacagaagacagtacagtttgacctgcaaattcgcagt
aaaaatgagaataactctcagagtcaggttgtcccctacagactggaggtggtggtcaag
gctgatgtcattttacaaggtgtgtcccttccagataaggtcttctttccacctccaaaa
tggaaggtgacaaagaatgtagcaatggagcaagatatcgggcctgctgtggagcacata
tatgagttggtaaataatggtccaagccgcattagtcacacacatcttcaactgaaatgt
cccatgaagctgcatgtccagaggtttatgtaccctttggagattatccctgtggggcct
ataaactgcacaacatacaatgttgtgaacccgatgaacataaagctgcagcagtccaca
gaacagccacctttattaacccaccaacttgagaagcgtgaaacacacaggggagagctg
gctgagctgacaaacctgtcctgttccagtgttgagtgctggaccctgcagtgtaatgtg
ggtgtattggagaaaggtaccagtgccatactcagagtgcgttcacgggtctggggtgag
acttttattatgaaaaagtataagaattttattctggagtgtgtcgccagttatgtggtg
gaaaagatgccctattctatattgccaaaggaagttccaagtggctctagagtggtgacc
acatctgtggtatggaataaaccagacagtcagtatggtgtgcctttgtggatcatcatt
ctggcaatactggctggtcttttgttgctggctctgcttatctatgttctgtataaactt
ggtttctttaagagaactccctatggcactgccatggaaaaagcacagctgaaaccccag
gcagcatctgaagcttaa
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