KEGG   Silurus meridionalis (southern catfish): 124398687
Entry
124398687         CDS       T08004                                 
Name
(RefSeq) heterogeneous nuclear ribonucleoprotein A1-like isoform X1
  KO
K12741  heterogeneous nuclear ribonucleoprotein A1/A3
Organism
smeo  Silurus meridionalis (southern catfish)
Pathway
smeo03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:smeo00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    124398687
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:smeo03019]
    124398687
   03041 Spliceosome [BR:smeo03041]
    124398687
Messenger RNA biogenesis [BR:smeo03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Other transport factors
     124398687
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     124398687
Spliceosome [BR:smeo03041]
 Common components
  Common spliceosomal components
   hnRNP proteins
    124398687
SSDB
Motif
Pfam: RRM_1 RRM_7 RRM_PARP14_3 Nup35_RRM_2 RRM_PARP14_1
Other DBs
NCBI-GeneID: 124398687
NCBI-ProteinID: XP_046724894
LinkDB
Position
16:13580792..13585122
AA seq 374 aa
MPKEEQPREPEQLRKLFIGGLSFETTDESLRSYFEQWGALTDCVVMRDPSSKRSRGFGFV
TYSSVDEVDAAMKARPHKVDGRLVEPKRAVSREDSNKPFAHTTVKKIFVGGIKEDTEESH
LRDYFEEFGKIEAVEIMIDHKTGNKRGFAFVTFDDHDAVDRIVIQKYHTINGHNSEVRKA
LSKQEMQNSASMRGRGGGNYGGRYGGNDFGGDRDGFRDGFRDGYRGGRGGNGGYGGDGYN
GGFGDGGYGGGGPGYGGNRGSGGYGGGGPGYGNNGGGGYGGGGGYGGGGGYGGGGSYDNY
NNGNGNFGGGNFGGGGGGGNYNDFGNYNSQQSSFGPVKGNFGGGGRSSGPYSGGYGGSSG
GGGGYGGGSGGRRY
NT seq 1125 nt   +upstreamnt  +downstreamnt
atgccgaaagaggaacagccccgagaaccggagcagcttcgaaagctgttcattggaggc
ctgagcttcgagacaacagacgagagcctgcgctcgtacttcgagcaatggggcgcgtta
accgactgtgtggttatgagagacccgagctccaagcgctccagaggtttcggttttgtc
acgtactccagcgtggatgaagtcgatgccgccatgaaggcgcgtccccacaaagtcgac
ggccgcctcgtagaacccaaacgcgccgtgtccagagaggattccaacaagcctttcgcg
cacaccacggtgaaaaagatctttgtgggcggcattaaggaagatacggaggagagccat
ctacgggactactttgaggaattcggaaagatcgaagcagttgaaataatgattgatcac
aagacggggaacaaaaggggcttcgcgtttgttacgttcgacgaccacgatgccgtggat
cgcatcgttattcaaaagtaccacacaataaacggccataattcagaagtgagaaaggcc
ctctctaaacaagagatgcagaattcagcgagcatgcgagggcgtggaggtggaaactac
ggcggtcgatatggcggcaacgactttggaggagaccgagatggatttagagatgggttc
agggatggatataggggagggagaggtggcaatggaggatatggaggtgatggctacaac
ggtggatttggagatggtggctatggtggtggtggtcctggctatggaggcaatcgcggt
agcggtggatatggaggtggcggaccaggctatggtaacaacggcggtggaggatacggt
ggcggtggaggatacggtggcggtggaggatatggtggcggtggcagctatgataattat
aacaacggcaatggaaactttggaggtggtaatttcggcggcgggggtggcggcggcaac
tacaatgattttggaaactacaacagccagcagtcgagctttggccctgtgaaaggaaac
tttgggggaggtggcaggagtagtggcccatatagtgggggatatgggggcagctcaggc
ggaggtgggggctatggcggaggatctggtggtagacgatattaa

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