Silurus meridionalis (southern catfish): 124398914
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Entry
124398914 CDS
T08004
Symbol
hbs1l
Name
(RefSeq) HBS1-like protein isoform X1
KO
K14416
elongation factor 1 alpha-like protein
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
124398914 (hbs1l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smeo03019
]
124398914 (hbs1l)
Messenger RNA biogenesis [BR:
smeo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
124398914 (hbs1l)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
HBS1_N
GTP_EFTU_D2
MMR_HSR1
AAA_22
DO-GTPase2
Motif
Other DBs
NCBI-GeneID:
124398914
NCBI-ProteinID:
XP_046725385
LinkDB
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Position
16:complement(3960351..4003511)
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AA seq
674 aa
AA seq
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MSRHRNVRGYNYDEDFEDDDIYGHSVDDDYCISPATAAEFIYSCRDSRQTRQVEPLEEEE
EHEDDEEMPTSPAVTQTLDSLMQGRLYSCLDQMRTVLGDSVPDSTLNEAALKFDCDPHRA
LDSILSAGSNSEQAAPPKTLPPPQKAKPRELPETRLESEVVPKVARMTVSGKKQTMGFDV
PSSEENGVGPSVRRGPSPDTTAVVAPETPSKAASAAEESAAPTPPRSTSKNKQRLNIRTE
LEQRQGGKPLLNLVVIGHVDAGKSTLMGHLLYLLGNVNKRTMHKYEQEAKKAGKASFAYA
WVLDETGEERDRGVTMDVGMTKFETNSKVVTLMDAPGHKDFIPNMITGAAQADVAVLVVD
ASRGEFEAGFEAGGQTREHALLVRSLGVTQLAIAVNKMDQVNWQQARFQEITSKLGQFLK
QAGFKDSDVYYIPTSGLSGQNLTSRSTEAALTAWYKGPCLLEQIDSFKAPQRSVEKPFRL
CVSDVFKDQGSGFCVTGKIEAGYVQTGDRMLAMPPNETCTVKGITLHDEPLDWAAAGDHV
SLTVTGMDIIKINVGCVFCDPKEPIRACTRFRARILLFNIEVPITQGFPVLLHYQTVSEP
ATFRKLISVLHKTSGEVLKKKPKCLTKGQNAVVEIQTQRPVALELYKDFKELGRFMLRYV
GSTIAAGVVTEIKE
NT seq
2025 nt
NT seq
+upstream
nt +downstream
nt
atgtctcgccacaggaatgtccgagggtataattacgacgaagattttgaggacgacgac
atttacggacactctgtagacgatgactactgcatctcgcccgcgacagcggctgagttt
atttattcgtgccgggactcgaggcagacgcggcaggtagagcccctggaggaggaggaa
gagcacgaggatgacgaggagatgccgacctcgcccgccgtcacgcagaccctcgactcg
ctgatgcaaggtcgtctgtactcctgtttggaccagatgaggacagtgctgggagactcg
gtgcctgactccactctaaacgaggcggctctgaagttcgactgcgatcctcaccgagct
ctcgactccattctgtccgcaggaagcaacagcgagcaggcggccccgcccaaaaccctt
cctccaccacagaaagcgaaaccccgcgagcttcccgagacgcgcctcgaatccgaagtg
gttcccaaagtggctcggatgaccgtctccggaaagaagcagaccatgggcttcgacgtg
ccgagctcggaggagaacggagtcggcccgtccgtacgccgaggtccgagcccggacacg
acagcggtagtggctccagagacgccgtctaaagcggcgtctgcggcggaggaatcggct
gccccgaccccaccacgatccaccagcaaaaacaaacagcgactcaacatccgcaccgag
ctggagcagaggcagggaggaaaaccgctcctcaacctcgtcgtcatcggtcatgtggac
gcaggtaagagcacgctcatgggtcatctcttgtacctgttggggaacgtgaacaaacgc
accatgcacaagtacgagcaggaggcgaagaaagccggcaaggcctcgttcgcttacgcc
tgggtgctggacgagaccggagaggagcgagacagaggggtgaccatggatgtgggcatg
accaagtttgagaccaactctaaagtggtgaccctgatggatgcacctggacacaaagac
tttatccctaatatgatcacaggagcagcacaggcagatgtagccgtgttggtagtggat
gccagtcgaggcgagttcgaagcagggttcgaggccggcggtcagacacgggaacacgct
ctcctcgttcgatctctgggtgtcacacaactcgctatcgctgtcaacaagatggaccag
gtgaactggcagcaggcgaggttccaagaaataacatccaaacttggccagtttctgaag
caggctggtttcaaggactctgatgtgtattacatccctaccagcggtctatcaggacag
aatctcaccagcagaagcacagaagcggcgctcactgcctggtacaaaggcccgtgtcta
ctggaacagatagactcgttcaaagctcctcagagatcagtggagaagccgttccgactc
tgcgtgtctgacgtcttcaaagatcaaggttcgggtttctgtgtgactgggaaaatcgaa
gctggctacgttcagaccggagaccggatgttggcgatgcctccgaacgagacctgcact
gtgaaaggtatcactctccacgatgagccattagactgggcagctgccggtgaccacgtc
agtttgaccgtcacagggatggacatcataaagatcaatgtcggctgtgtgttctgtgac
cccaaggagcccatcagagcctgcactcgcttccgagcccgaatcctgctgtttaacatc
gaagtgccaatcacacaaggcttccctgtccttctgcattaccagacagtgagtgaacct
gccaccttcagaaagctcatcagcgtgttgcacaaaaccagcggagaggtcctgaaaaag
aaaccaaaatgtttgactaaaggccagaatgctgtggtggagattcagactcagagacct
gtggctctggagctctacaaggactttaaagaacttggacgcttcatgctgcgatatgtg
ggttccaccatcgccgctggagtcgtcacagagatcaaagaataa
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