Silurus meridionalis (southern catfish): 124399095
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Entry
124399095 CDS
T08004
Symbol
ssrp1b
Name
(RefSeq) FACT complex subunit SSRP1 isoform X1
KO
K09272
FACT complex subunit SSRP1/POB3
Organism
smeo
Silurus meridionalis (southern catfish)
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
smeo03000
]
124399095 (ssrp1b)
03036 Chromosome and associated proteins [BR:
smeo03036
]
124399095 (ssrp1b)
Transcription factors [BR:
smeo03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG2-related
124399095 (ssrp1b)
Chromosome and associated proteins [BR:
smeo03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
FACT complex
124399095 (ssrp1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PH1_SSRP1-like
Rttp106-like_middle
SSrecog
POB3_N
HMG_box
HMG_box_2
HMG_WDHD1
SSRP1_C
FERM_C1_MyoVII
Motif
Other DBs
NCBI-GeneID:
124399095
NCBI-ProteinID:
XP_046725771
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All DBs
Position
2:complement(9847032..9862293)
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AA seq
723 aa
AA seq
DB search
MPWLTFWSLMTFIRRSRVPGVRFCAVLCCGNSQDRVNVCISETTPNDGRLRFSKQMVVYK
SSKTGKVDSIPVSELSQAQWRRVCLGHGIKLSTSSGHVYKYDGFKDSDFEKISEYFKDNY
KMELIEKDMCVKGWNWGTAKFNGPLLSFEVSDTPVFEIPLSSVSQCTTGKNEVTLEFHQN
DDTEVSLMEVRFYVPPSTGDEGADPVEAFAQNVLSKADVIQATGDAVCIFRELQCLTPRG
RYDIRIYPSFLHLHGKTFDYKIPYTTVLRLFLLPHKDQRQMFFVISLDPPIKQGQTRYHF
LILLFSKDEEINLTLNMSEEEVERRFEGKLTKNMSGSLYEMVSRVMKALVNRKITVPGNF
QGHSGAQCITCSYKASSGLLYPLERGFIYVHKPPVHLRFEEIACVNFARGTTTTRSFDFE
IETKQGNQYTFSSIEREEYGKLFDFVNAKKLSIKNRGFKEGMKVRDDMYSDSDDDQHDAY
LERMKQEGKIREEANDSDDSEAGSDESFNPGDEDDDVAEEYDSKASASESSAEDADSGEE
SKKKPAKKVKPMKEGKHKKEKAMKESSAPKRPMSAYMLWLNSSRDRIKSENPGISVTEIL
KKAGEMWKQLNKDKKEEWDGKAEEAKKEYERAMKEYRESGGSTSKKARKKGKKNEEKKKK
KLGKGREKERNRAAGGNDSFKSPEFISSEESSSESNRGRGRKRKGSADEEKQSTPSSEES
GSD
NT seq
2172 nt
NT seq
+upstream
nt +downstream
nt
atgccatggctgacattctggagtttaatgacatttatcaggaggtcaagggttcctggg
gttaggttctgtgctgtgctgtgctgtggcaactctcaggatagagtgaacgtgtgcatc
agtgagacgactcctaatgacgggcgtctgcgattcagtaagcagatggtggtgtacaaa
agcagtaagacaggcaaggtggacagtatccctgtctcagagctcagccaggctcagtgg
aggcgagtctgcctgggccacggcattaaactctccaccagcagcggacacgtgtacaaa
tacgatggcttcaaagacagtgattttgaaaaaatctcggagtattttaaagataattac
aaaatggagctgatcgagaaagacatgtgtgtaaaaggctggaactggggcactgctaaa
ttcaatggcccattgctgtcctttgaagtgagtgacactcctgtgtttgagatcccactc
tccagtgtatcccagtgtacaactggaaaaaatgaagtcactttagagtttcatcagaac
gatgatacagaggtgtcactcatggaggttcgtttttacgtcccaccttccacaggagac
gagggagcggacccggtagaggcatttgcccagaatgtactttctaaggcagatgtgatt
caggctacaggagacgctgtgtgtattttcagagagctgcaatgtcttacacccagggga
aggtatgatattcgtatctacccctcctttcttcatctgcatggtaagacgtttgactat
aagatcccctacaccactgtactgcgcctcttcctgctaccccataaagaccagagacag
atgttctttgtgatcagtttggatccccccattaaacagggccaaactcgctaccatttc
ctcatccttctgttttccaaggacgaagaaataaacctcaccctcaacatgagcgaggaa
gaggtagagaggcggtttgagggaaagctgactaagaacatgtctggctctttatatgag
atggtcagcagggtgatgaaggctcttgttaacaggaagatcacagtgcctggaaacttt
caaggtcactctggtgctcagtgtattacttgctcctataaggccagctcagggctgctg
tatcctttggagagaggtttcatctatgttcacaagcccccagtgcacttgcgctttgag
gagatcgcttgtgtgaactttgccagaggcaccaccaccacacgctcctttgactttgag
attgagaccaaacagggcaaccagtacaccttcagcagtattgagagagaagagtatgga
aagttgtttgattttgtcaatgctaagaaactgagcatcaagaacagaggcttcaaagag
ggtatgaaggtcagagacgacatgtacagtgactcagatgacgatcagcatgatgcttac
ctggagcgcatgaagcaggaggggaagatccgtgaggaggccaacgacagtgatgactct
gaggcgggcagcgatgaatcatttaaccctggagatgaagatgatgatgttgcagaagag
tatgacagtaaagcttcagccagtgaaagtagtgctgaagatgcagacagtggagaagag
agcaagaagaaacctgctaagaaggttaaacctatgaaggaaggaaaacataaaaaagag
aaggcgatgaaggaaagcagtgcccccaagaggccaatgagtgcatatatgctgtggctg
aactctagcagagatcgcattaaatcagaaaaccctggaatctcggtcactgagatttta
aagaaggctggtgagatgtggaagcagctgaacaaagacaagaaagaggagtgggacgga
aaagccgaggaagcgaagaaagaatacgagcgagccatgaaggaatacagagaaagtggt
ggaagcacctcaaaaaaagcaagaaagaaaggaaaaaagaatgaggagaagaagaaaaag
aagttaggtaaaggaagggagaaagagaggaacagggctgctggtgggaatgacagcttt
aagagtccagagttcatctccagtgaggagagttcttccgagtccaaccgcggcagaggt
cgcaagcgcaagggctcggctgatgaagaaaaacaaagcactcccagctcagaggagtct
ggctcagattaa
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