Silurus meridionalis (southern catfish): 124399261
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Entry
124399261 CDS
T08004
Symbol
slc6a1a
Name
(RefSeq) sodium- and chloride-dependent GABA transporter 1a
KO
K05034
solute carrier family 6 (neurotransmitter transporter, GABA) member 1
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo04082
Neuroactive ligand signaling
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04082 Neuroactive ligand signaling
124399261 (slc6a1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
smeo02000
]
124399261 (slc6a1a)
Transporters [BR:
smeo02000
]
Solute carrier family (SLC)
SLC6: Sodium- and chloride-dependent neurotransmitter transporter
124399261 (slc6a1a)
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Gene cluster
GFIT
Motif
Pfam:
SNF
Motif
Other DBs
NCBI-GeneID:
124399261
NCBI-ProteinID:
XP_046726049
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Position
16:566462..587731
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AA seq
600 aa
AA seq
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MSTNGAKTVTVDGQVAMELNEVTSHDRFKPEEVQEQRNDDKKKKKKDIPERETWAGKFDF
LLSCVGYAIGLGNVWRFPYLCGKNGGGAFLIPYFLTLVFAGMPLFLLECSLGQYMSVGGL
GVWKLAPMFKGVGLAAAVLSFWLNIYYIVIISWALYYLYNSFTTELPWKSCNNPWNTERC
FTNYSIADTTNLTSAVMEFWERNVHNMTEGLEKPGQIRIPLAITLAIAWVLVYFCIWKGV
RWTGKVVYFSATYPYFMLCILFIRGVTLPGAKEGILFYITPDFEKLKESEVWLDAATQIF
FSYGLGLGSLIALGSYNPFNNNVYRDSIIVCIINSSTSMFAGFVIFSIVGFMAHVTKRSI
ADVAASGPGLAFLAYPEAVTQLPISPLWSILFFSMLLMLGIDSQFCTVEGFITALVDEFP
GLLRNRREIFIACVCVVSYIIGLSNITQGGLYVFKLFDYYSASGMSLLFLVFFECISISW
FYGVNKFYSNIEEMIGYKPCIWWKLCWVVFTPLVVAGVFLFSAVQMVPLKMNNYVFPSWG
QGVGWFMALSSMILIPGYMAYMFLSTRMKSKEEVKNRPEQQQQQCENTVTVYTHASNPEQ
NT seq
1803 nt
NT seq
+upstream
nt +downstream
nt
atgtcgacaaacggcgctaaaacggtcacggtggacggccaggtggcgatggagctgaac
gaggtcacctcccatgacagatttaaaccagaggaggtacaggagcaacggaatgacgac
aagaagaagaagaagaaggatattcctgaaagggaaacgtgggcagggaagtttgacttc
ctgctgtcctgtgtgggatacgccatcgggctggggaacgtgtggagattcccgtacctg
tgtgggaaaaatggaggaggtgccttcttgattccctacttcctcaccctggtatttgct
ggaatgccattgttcctgctggagtgttcgcttgggcagtacatgtctgtcgggggactc
ggggtctggaaactggcaccaatgtttaaaggagtcggcctggccgcagccgtgctctcc
ttctggctcaacatttactacatcgtgatcatttcctgggctttgtattatctgtacaat
tcctttaccactgagcttccatggaaatcttgcaacaatccatggaacacagagagatgt
ttcacaaactacagcattgcagacaccaccaacctgaccagcgcagtcatggagttctgg
gaacgtaacgtacataacatgaccgagggtctggagaaaccggggcagatccgcattccg
ctagcaataactctggccatcgcctgggtcctcgtgtacttctgtatctggaaaggtgtt
cgctggactggaaaggtggtgtacttctcagccacctacccatacttcatgctatgtatc
ctgttcatccgtggagtcacacttcctggagcgaaagaaggaattctgttctacatcaca
cctgatttcgagaagctgaaagagtccgaggtctggctggatgctgcgactcagatcttt
ttctcgtacggtttggggctcggctctctgattgctctcggcagctacaaccctttcaac
aacaacgtctacagggactcgatcatcgtgtgcattataaactcctccaccagtatgttt
gctggatttgtcattttctccatcgtggggttcatggctcacgtgacaaagaggtcgata
gctgatgtagctgcttcaggtccaggtttggcgtttttagcgtatcctgaagccgtgacg
cagttacccatatctcctctgtggtccatcctgttcttctccatgctgctcatgctggga
atcgacagccagttctgtacagtggaaggcttcatcacggctctggtggacgagttcccg
gggctcctgaggaacagacgagagattttcattgcgtgtgtgtgtgtggtgtcgtacatc
atcggcctctccaacatcacacagggcggcctttacgtcttcaaactgttcgattattac
tccgccagtggcatgtctctcctgttcctggttttcttcgagtgtatctccatctcctgg
ttttacggtgtgaataaattctacagtaacattgaggagatgatcggatataaaccctgc
atatggtggaaactctgctgggtggttttcactcctctggttgttgcaggagtatttctg
ttcagcgccgtccaaatggttcctctcaaaatgaataactacgtgttcccatcgtggggt
cagggggtcggctggtttatggctctctcctccatgattctcatcccaggatacatggcc
tacatgttcctcagcaccaggatgaaatctaaagaggaagtgaagaacagacctgagcag
cagcagcagcagtgtgaaaacaccgtcactgtttacacacacgcttcaaaccctgagcag
taa
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