Silurus meridionalis (southern catfish): 124399441
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Entry
124399441 CDS
T08004
Symbol
mbd4
Name
(RefSeq) methyl-CpG-binding domain protein 4 isoform X1
KO
K10801
methyl-CpG-binding domain protein 4 [EC:3.2.2.-]
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
124399441 (mbd4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
smeo03036
]
124399441 (mbd4)
03400 DNA repair and recombination proteins [BR:
smeo03400
]
124399441 (mbd4)
Chromosome and associated proteins [BR:
smeo03036
]
Eukaryotic type
Heterochromatin formation proteins
MBPs (metylated DNA binding proteins)
124399441 (mbd4)
DNA repair and recombination proteins [BR:
smeo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
124399441 (mbd4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MBD
HhH-GPD
Clr2_transil
Motif
Other DBs
NCBI-GeneID:
124399441
NCBI-ProteinID:
XP_046726288
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All DBs
Position
17:7472680..7480032
Genome browser
AA seq
388 aa
AA seq
DB search
MLGSDWSEEVKMIPENCTDQDMAASTKQEDTSLPPGWTKETRQRKQGKTAGRMDTYIISP
QGKRFRSKAELQKYLLSEECVHLDLDAFDFTPKTKARTEKSDSEKPQQKKERKPGRRKTT
RTAENHPGTQNTEAQMQETKSNIEELTDNQCEREEASTSENILTAVPVISVTAAPESEGE
LREEEETEESEEVSDKKGNRAGCEKSSPVRNKRNGTNLLSEKRRTSPYFKKKNDGLSPPK
RKAFRKWTPPRSPFNLVQETLFHDPWKLLVATIFLNKTSGKLAIPMLWQFFERYPSAEVT
RASDWKPLADLMQPLGLNSLRAKTLVRFSDEFLTKSWRYPDELYGIGKYGNDSYRIFCLG
EWREVTPQDHKLNKYHSWLLENHKQLGI
NT seq
1167 nt
NT seq
+upstream
nt +downstream
nt
atgctcggatctgattggtcagaagaggtgaaaatgattcctgaaaactgtactgatcaa
gacatggctgcaagtacaaagcaggaggacacgtcgctccctcctggttggacaaaagag
acaagacagcggaaacagggcaagacagcaggcagaatggacacttatattatcagtcct
cagggtaaacgcttcagatccaaagcagaactccagaagtacctgctctctgaggaatgt
gttcacctggacctagacgcttttgacttcacacccaaaaccaaagcacggaccgaaaaa
tccgactccgaaaagccacaacaaaaaaaagaacgaaaaccaggaaggaggaaaacaact
cgaactgcagaaaatcatcctggaacacagaatacggaagcccagatgcaggaaacaaag
agtaacatagaagaactaacagacaaccagtgtgaaagagaagaagcgtccaccagtgaa
aacattttaacagctgttccagtcattagcgtgacggcagcaccggagagcgaaggagag
ctgagagaggaggaggagacagaagaaagtgaagaagtgagtgataagaaagggaacaga
gccgggtgtgagaagagctcacctgtcaggaacaaacgaaatgggacaaacctactttca
gagaagcggagaaccagtccatactttaagaagaagaatgacggtctcagtcctccaaag
cgtaaagcgttcaggaagtggactcctccacgttcaccgttcaacctggtacaagaaacc
ttgtttcatgacccgtggaagcttctagtggccaccatcttcctcaacaaaacaagcgga
aaactggcaatacccatgttgtggcagtttttcgagcgctacccatctgctgaggtaact
cgtgccagtgactggaagccactcgctgatcttatgcagcctctcggtctgaactcccta
cgagccaaaaccctcgtccgcttctccgacgagttcctcaccaagtcatggcggtatccc
gatgagctctatggcatcggcaaatacggcaacgattcgtatcgtatattctgtttggga
gaatggagagaggtcaccccacaagaccacaagctgaacaagtatcacagttggcttctg
gagaaccacaagcaattaggaatctga
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