Silurus meridionalis (southern catfish): 124399548
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Entry
124399548 CDS
T08004
Symbol
lsm1
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm1
KO
K12620
U6 snRNA-associated Sm-like protein LSm1
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
124399548 (lsm1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smeo03019
]
124399548 (lsm1)
Messenger RNA biogenesis [BR:
smeo03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
124399548 (lsm1)
mRNA degradation factors
5'-3' decay
Lsm complex
124399548 (lsm1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
124399548
NCBI-ProteinID:
XP_046726489
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All DBs
Position
17:967918..970780
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AA seq
133 aa
AA seq
DB search
MNYMPGTASLIEDIDKKHLVLLRDGRTLIGILRSIDQFANLVLHQTVERIHVGKKFGDIP
RGIFVVRGENVVLLGEVDLDKDCDQILQRVSIEEILEEQRVEQQAKQESERLKLQAVKER
GLSLPKTDTLDDF
NT seq
402 nt
NT seq
+upstream
nt +downstream
nt
atgaattacatgccggggacagccagcctcatcgaggacatcgacaagaagcacttggtt
cttctgagggacgggaggacgctgatcgggatcctcaggagcatcgatcagttcgcgaac
ctggtgctgcaccagacggtggagcggatccacgtggggaagaagttcggagacatccct
cgtgggatcttcgtggtccgaggagagaacgtggtgctgctgggagaagtggatctggat
aaagactgcgatcagatcctgcagcgagtctccatcgaggagatcctggaggagcagcgg
gtggagcagcaggccaagcaggagtctgagcgtctgaagctgcaagcggtgaaggagcga
gggttatccctccccaaaaccgacacactcgacgatttctga
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