Silurus meridionalis (southern catfish): 124399567
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Entry
124399567 CDS
T08004
Symbol
rbm39b
Name
(RefSeq) RNA-binding protein 39b
KO
K13091
RNA-binding protein 23/39
Organism
smeo
Silurus meridionalis (southern catfish)
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
smeo03041
]
124399567 (rbm39b)
Spliceosome [BR:
smeo03041
]
Common components
Common spliceosomal components
General mRNP proteins
124399567 (rbm39b)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RBM39linker
RRM_occluded
RRM_5
RRM_8
Motif
Other DBs
NCBI-GeneID:
124399567
NCBI-ProteinID:
XP_046726525
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All DBs
Position
17:complement(5793685..5800954)
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AA seq
495 aa
AA seq
DB search
MADDFDIEAMLEAPYRKGDSKSYSANGYEEHSRKKRHSRSRSPSADRRRSRSRERKKGKD
KRKSRSRERKRSRSRERRSRSQERHGRYRGHKSPHRRRSRSKSPVKKEKSPIRKPIDNLS
AEERDARTVFCMQLAARIRPRDLEEFFSAVGKVRDVRMISDRNSRRSKGIAYVEFVETTS
VPLAIGLTGQRLLGVPIIVQASQAEKNRAAAAAAALNLQKGNAGPMRLYVGSLHFNITEE
MLRGIFEPFGRIESIQLIMDSETGRSKGYGFISFADAECAKRALEQLNGFELAGRPMKVG
HVTERSDGSSASSFLDNDELERTGIDLGTTGRLQLMARLAEGTGLQIPAAAKQALQMSGS
IPFGNLPGVIPAPSMNQAMNLPTQPLATHCLQLSNMFSPQSENEPGWDIEIQDDVIEECN
KHGGVVHIYVDKNSAQGNVYVKCPSIPGAMAAVSALHGRWFAGKMITAAYVPLPTYHNLF
PDSVTAIQLLRPTRR
NT seq
1488 nt
NT seq
+upstream
nt +downstream
nt
atggcagacgactttgatatcgaggcgatgcttgaagcgccttacaggaagggtgacagc
aagtcctatagtgcaaacggctatgaagaacacagccggaagaaaaggcacagtcggagt
cgcagcccaagtgccgatcgtcgcaggagtaggagcagagagcgcaagaagggcaaggac
aagcgtaagagccgcagtcgggagagaaagcggtcacgtagcagagagcgccgttctcga
agtcaagaaaggcatggccgttatcgaggtcacaaaagcccacaccgcagacgttctcga
agcaagagcccagtaaagaaagagaagagtccaattaggaaaccaatcgataatctgagt
gcggaggagagagatgcccgcacggtattctgcatgcagctggctgccagaatcagaccc
agagacctggaggagttcttctctgcggtgggcaaagtacgtgatgtaagaatgatttca
gacagaaattctcgcagatctaagggtatcgcatatgttgagtttgtggaaactacgtcg
gtgcccctggctattgggttgacgggacagaggctgctgggagtgccaatcattgttcag
gcctcgcaggctgagaaaaacagagcagcggcggcagcagcggcccttaacctgcagaaa
ggcaacgcagggccaatgcggctctatgtgggctccctgcacttcaacatcacagaggaa
atgctcagaggcatatttgagccctttggaaggattgaaagcatccagttgatcatggac
agcgaaactggcaggtcaaaaggttatggctttatatcgtttgcagatgctgaatgtgcc
aagagggccctagagcaactgaacggttttgagctggccgggcggcccatgaaggtgggg
catgtgacagagcgctcagacggctcatctgccagctctttcttggacaatgatgagctg
gagagaacaggcatcgacttgggcaccacaggccgattgcagctgatggcacgtcttgca
gaaggtacagggctacagattcctgcagctgcaaagcaggctctgcagatgagtggctct
atcccatttggtaaccttcccggagtgattcctgcaccaagcatgaaccaggccatgaac
ctccccacccaacccctggccactcattgcctacagctttccaacatgttcagcccacag
tcggaaaacgagccaggctgggatatcgaaattcaggatgatgttattgaagagtgcaat
aaacacggaggtgttgttcacatatatgtagacaagaattctgctcaaggtaatgtgtat
gttaagtgtccgtctatcccgggtgccatggctgccgtcagtgccctgcatggtcgctgg
tttgcaggcaaaatgatcactgctgcctacgtgcccctcccaacctaccacaacctgttc
cctgattcagtcacagccatccagctgttgagacccacacgccggtga
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