Silurus meridionalis (southern catfish): 124399572
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Entry
124399572 CDS
T08004
Symbol
rorca
Name
(RefSeq) RAR-related orphan receptor C a isoform X1
KO
K08533
RAR-related orphan receptor beta
Organism
smeo
Silurus meridionalis (southern catfish)
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
smeo03000
]
124399572 (rorca)
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
smeo03310
]
124399572 (rorca)
Transcription factors [BR:
smeo03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
124399572 (rorca)
Nuclear receptors [BR:
smeo03310
]
1. Thyroid hormone like
1F. RAR-related orphan receptor
124399572 (rorca)
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Gene cluster
GFIT
Motif
Pfam:
zf-C4
Hormone_recep
Motif
Other DBs
NCBI-GeneID:
124399572
NCBI-ProteinID:
XP_046726540
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Position
17:complement(24642183..24661042)
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AA seq
461 aa
AA seq
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MRAQIAVIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQNNAMYSCSRQRNCVIDRTNRN
RCQHCRLQKCLALGMSRDAVKFGRMSKKQRDSLYAEVQKHQQGQECISNIVSSGEVGEEP
GEKSHDGNIGTCSRSSSAALSSDLDDLGGLLLDLPLTPEDEYCGLELQGNNRANGEGSSG
EGSNSSSNGSTEFKQEHLGLSPLKEGFLLLEMERIAQSVVKSHIETSQYSTEDLKRLVWN
LYSAEETRTYQNKPTEVMWQQCVAHLTNAIQYVVEFAKRISGFMELCQNDQIILLKAGCL
SVLLIQMCRAYNPANHTVLFNGKFASVQLFKALGCDDLVNAVFELAKLMSRLQLTEEEMA
LFSAAVLFSPDRPWLTDRQQVQRLQEKVYQALQCCLNRDGANEHKLDKMLAKLPVIKSIC
NLHIDKLEFFHLLHPETACSFPPLYREVFVSENFFPDSTKG
NT seq
1386 nt
NT seq
+upstream
nt +downstream
nt
atgagagctcaaattgcagtgatcccctgtaagatctgtggggacaaatcatcaggaatc
cattatggagtgatcacatgtgaaggatgtaagggttttttccgacgcagtcagcaaaac
aatgccatgtactcatgctctcggcagagaaactgtgtgatcgatcggacgaacaggaac
cggtgtcagcactgccggctgcagaaatgtctggcactcggcatgagccgtgacgctgtg
aagttcggccgtatgtctaagaagcagcgggacagcctgtacgctgaggtgcagaaacac
cagcagggtcaggaatgcatcagcaacatcgtgtcctcaggcgaagtgggcgaggaaccc
ggggagaagagccacgacggaaacataggaacctgcagccgcagctccagcgcagccctc
agcagtgacctcgacgaccttggaggcctgctgttagacctgcccctgactccagaggac
gagtattgcggcctggagctgcagggcaacaacagggcgaacggagaggggagcagcgga
gaaggcagtaactcatcctcaaatggctccacagagtttaaacaagaacaccttggactt
tcaccactcaaagagggattcttactactcgagatggagcgcatcgcccagagtgtggtg
aaatcacacatagagacgagtcagtacagtacagaggacctgaaacggcttgtgtggaac
ctgtactcagccgaggagactcgcacgtaccagaacaagccgactgaggtgatgtggcag
cagtgtgtggcgcacctcactaacgccatccagtatgtggtggagttcgccaagcgcatc
tctggcttcatggagctgtgtcagaacgaccagatcatcctgcttaaagcaggatgtctg
agcgtgctgctgattcagatgtgtcgagcctacaaccctgcgaaccacacggtgctcttc
aatgggaagtttgcaagtgttcagctcttcaaagctcttggttgtgatgacctggtgaac
gctgtgtttgaactcgctaaactgatgagccgcctgcagctaacggaagaagaaatggct
ttgtttagtgccgctgttctattctctccagatcggccctggcttacagacagacagcag
gttcagaggctgcaggagaaggtttatcaggcgctacagtgctgcttaaacagagatggc
gccaacgagcacaaactcgacaagatgctggctaaactacccgtgataaagtccatctgt
aacctccacatcgataagctggagttcttccacctgcttcacccagaaacagcctgcagc
ttccctccgctgtatcgggaggtgtttgtgagcgagaacttcttccccgattccaccaag
ggctaa
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