Silurus meridionalis (southern catfish): 124399637
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Entry
124399637 CDS
T08004
Symbol
hcfc1b
Name
(RefSeq) LOW QUALITY PROTEIN: host cell factor 1b
KO
K14966
host cell factor 1
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo03083
Polycomb repressive complex
smeo04980
Cobalamin transport and metabolism
smeo05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
124399637 (hcfc1b)
09150 Organismal Systems
09154 Digestive system
04980 Cobalamin transport and metabolism
124399637 (hcfc1b)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
124399637 (hcfc1b)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
smeo01009
]
124399637 (hcfc1b)
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
smeo03036
]
124399637 (hcfc1b)
03029 Mitochondrial biogenesis [BR:
smeo03029
]
124399637 (hcfc1b)
Protein phosphatases and associated proteins [BR:
smeo01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
124399637 (hcfc1b)
Chromosome and associated proteins [BR:
smeo03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
NSL complex
124399637 (hcfc1b)
HMT complexes
COMPASS/SET1 complex
124399637 (hcfc1b)
MLL-HCF complex
124399637 (hcfc1b)
Polycomb repressive complex (PRC) and associated proteins
PR-DUB complex
124399637 (hcfc1b)
Mitochondrial biogenesis [BR:
smeo03029
]
Mitochondrial quality control factors
Regulator of mitochondrial biogenesis
Other regulator of mitochondrial biogenesis
124399637 (hcfc1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Kelch_3
Kelch_5
Kelch_4
Kelch_1
Kelch_6
fn3
Motif
Other DBs
NCBI-GeneID:
124399637
NCBI-ProteinID:
XP_046726668
LinkDB
All DBs
Position
17:complement(26423591..26442694)
Genome browser
AA seq
1899 aa
AA seq
DB search
MTTSGTNMTSGGSGTVLQPRWKRVLGWSGPVPRPRHGHRAVAIKELMVVFGGGNEGIVDE
LHVYNTATNQWFIPAVRGDVPPGCAAYGFVCDGTRLLVFGGMVEYGKYSNDLYELQASRW
EWKRLKPKAPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNIPRYLNDLYTLEL
RPGSNVAGWDIPITYGVLPPPRESHTAVVYTEKTSKKSRLVIYGGMSGCRLGDLWTLDID
TLTWNKPAISGTAPLPRSLHSATTITNKMYVFGGWVPLVMDDVKVATHEKEWKCTNTLAC
LNLDSMAWETILMDTLEDNIPRARAGHCSVAINSRLYVWSGRDGYRKAWNNQVCCKDLWY
LETDRPLAPSRVQLVRANTSSLEVSWGAVPTADAYLLQLQKYEIPAATAASSPSITPTTS
LPTNSPKSPAPAAAAPATQSIPITGVTLIPQVPSPTTSMPGSPLAAASPRGPAILKVAAP
QSTAGTSIVTVRQANQVGKSPVTVASLPAGVRMVVPAQSAQGTPIGSSPQMSGMAALAAA
AAATQKIPPSSTATVLNVPAGATIMKTVAVTPGSTAHPASVKVASPMTVSNPATRMLKTA
AAQAGTSTITTPNTPTRPIITVHKSGTVTVAQQAQVVTTVVGGVTKTITLVKSPLTVGSG
GTLISSLGKVMSMVQTKPVQSAAVTGQAGSPVTQIIQTKGPLPAGTILKLVTSADGKPTT
IITTTQAGGTGTKPTILGISPTSTNKPGTTIIKTIPMSAIQQGAAGAAVSGGIKSPITII
TTKMVTPGTQGKIITAVPKLAAGSAQQGVTQVVLKGAPGQPGTILRTLPMGGVRLVSPGT
VSAVKPTVTTLVVKGTTGVTTLGTVTGTISSSLAGANVASANASLATPITTLGNIATLSN
QVISPTAITVSAAQANLTTTPTVAIQAATQPTQVTLISTPSGVEAQQDLPVSILASPTSE
QPSTTGAEAGDMPGEVTLVCSNPPCETHETGTTNTATTASSKIGTERVCSNPPCETHVTG
TTNTTTTASSDMGRMQQVCSNPPCETHETGTTNTSTQASSNMGMGTNTVQRVCSNPPCET
HETGTTNTSTQASSSMGTVQRVCSNPPCETHETGTTNTSTQASSSMGSAETNTVQRVCSN
PPCETHETGTTNTSTQASSSMGSAETNTVQRVCSNPPCETHETXTTNTSTQASSSMGSAE
TNTVQRVCSNPPCETHETGTTNTSTQASSSMGSAETNTVQRVCSNPPCETHETGTTNTPT
QASSTIGAGQNGTVQRVCSNPPCETHETGTTNTATTATSSLESAEGSAQQSGNGQDAGTS
VEATSSTEPTNPPIQSRAITTVTQATPTPGPSVPEISSMAGSAVVEGSGEAEAMEQGDSE
AVAMGEEPMQTEGELGEEGAVRVVAIEEGATGDGGTMLQVHVAMEAQPGQGDQMEQGGEG
AEAVALAGQDSEALALPQELMSAEGQQTTLMVTGLTPEELAVTAAAEAAAQAAATEEAQA
LAIQAVLQAAQQAVLNEDAGQDGQQTTTIPIVLTQQELAALVHQQQQLQEVQAAAAAAAA
AAAAQQLGAGSGAATLPTEGLAPADSLNDPTTESNGHEMAVAAVTGAVAQLLPSTSAETL
APSSTLAPAQPMVVASPAKIQAATTLAEVANGIESAAGKPGVPPAVVKPPVKKENQWFDV
GIVKVTNTVVTHYYIPADDSEVTDDDSGAIPDYSQMKKVELSPGTAYKFRVAGINACGRG
TFSEVSAFKTCLPGFPGAPCAIKISKSPDGAHLTWEPPSVTSGKIIEYSVYLAIQSSQTT
EAKASAPAQLAFMRVYCGPNPSCLVQTSSLSNAHIDYTTKPAIIFRIAARNEKGYGPATQ
VRWLQETSKDGSAAKPAAKRPVSSPDTKGTGPKKARADQ
NT seq
5700 nt
NT seq
+upstream
nt +downstream
nt
atgactacttctggtaccaacatgacgtcgggcggctcgggcaccgtgttgcagccgagg
tggaagcgagtgctcggatggtccggcccggtgccccggcctcgtcacggccaccgcgcc
gtcgccattaaagagctgatggtggtgttcggcggcggcaacgagggtattgtggacgag
cttcacgtatacaatacagcgactaaccagtggtttatcccggctgtccggggcgatgtg
ccacccggctgtgctgcgtatggatttgtgtgtgacggcacccggctcttggtgttcggg
ggaatggtagaatatggaaaatacagtaacgatctttatgaactacaggccagtagatgg
gagtggaaaaggctgaagcctaaagctccaaagaacggcccacctccttgtccacgtctg
ggccacagcttctcccttgtggggaataaatgctacctttttggcggacttgccaacgac
agcgaagatcccaaaaacaatattccgagatacctgaatgacctgtacacactcgagctg
cgtccaggctccaatgtggcaggctgggacatccctatcacatatggcgtgcttcctcct
cctcgtgagagccacacagccgtagtctacacagagaaaacctcaaagaagtctcgcctc
gttatctatggaggcatgagcggctgccgcctcggagacctctggacgttggatatagac
acacttacttggaacaagccggcaattagtggcactgctcctcttcctcgcagtctccac
tctgccaccaccataaccaacaagatgtacgtgttcggaggatgggtgcccctggtcatg
gatgacgttaaagtggctacacatgaaaaggaatggaagtgtacaaacacactggcatgt
ctaaatctggactcaatggcatgggagactattttaatggacactctggaagacaacatc
ccgagagcaagggcagggcactgctccgtagcgatcaactcccggctgtacgtttggagc
ggcagggacggctaccgcaaagcctggaacaaccaagtgtgctgcaaagacctctggtat
ttagagacagaccgtcctctggcgccgtcgcgcgtgcagctggttcgtgccaatacaagt
tctctggaggtgagctggggcgccgtgcccaccgctgacgcctacctgctgcagctccag
aaatatgaaattcctgcagcaacggcggcctcctcaccgagcatcactcccaccacctcc
ttgcccaccaactcgcccaagagccctgccccggctgccgcagcccctgctactcaaagc
ataccaatcacaggggtcaccctcataccccaggtgccctcacctaccacatctatgccc
gggagtccactcgctgctgcctcaccgcgcggtccagccatcctgaaagtggcagctcct
cagtccactgctgggacgtctatagtcactgtgcgtcaggccaatcaagtgggaaaatcc
ccagttacagttgcatcgcttcctgccggagtccgtatggtcgttcctgcacagagcgca
caaggaacgccgatcgggagcagcccgcagatgagtggcatggccgcactggctgcagcg
gcagctgccacacagaagattcctccttcatcaacagcaactgtgctgaatgttccagca
ggagccaccatcatgaaaaccgttgctgtcactccaggctccacagctcatcctgcttca
gtaaaagtagcctcaccaatgactgtgagcaacccagccacccgcatgctaaagaccgct
gcagctcaggctggaacttcgaccatcaccaccccaaacacgccgacacgtcccatcatc
accgtgcacaaatcaggcacggtgaccgtggcccagcaggcccaggtggtcaccaccgtg
gtgggaggagtcactaaaaccatcacgctcgtcaagagcccgctcactgtgggcagcggc
ggcactctgatctccagtctgggaaaagttatgtcaatggtccagacaaaaccagtacag
tccgctgcagtgaccggccaagccggcagccctgtcacacagatcatacagacgaagggt
cctctgcctgcaggaaccattctgaagctagttacatcagcagacggcaaacccaccacc
ataatcactaccacccaggcaggtggcactggaaccaaaccaaccattctgggcatctcc
ccgaccagtactaacaagcctggcaccacaatcatcaagaccataccgatgtctgctatt
cagcagggtgctgcaggtgctgccgttagcggtggaataaaatctcccatcacgatcatc
acaaccaaaatggtgacacctggcacacagggaaaaatcattaccgcagtacccaaactg
gctgctggatctgcacagcagggagtgactcaggtggtcctgaagggggcgccagggcag
cctggtaccattcttcgcaccctgcccatgggtggtgtgcgcctcgtttctcctggtaca
gtttctgctgtcaaacccacagttaccacactggtggttaaaggcaccacaggagtaact
actcttggcactgtgaccggaacaatttctagcagcctggcaggggccaatgttgcttct
gctaatgctagcctggctactcccataaccaccctgggcaatatagctacactctccaac
caggtgatcagtcccactgcgatcacagtgtctgcagcccaggcgaacctgactactaca
cctacagtggccatccaggcagctacgcagcccactcaggtgaccctgattagcacccct
agtggcgtggaggcacagcaagacctccctgtgtctatcctggcctcccccacctctgag
cagccctctaccaccggtgctgaagcgggtgacatgccgggtgaagtgactctggtctgt
tccaacccaccatgcgagacccacgaaaccggtaccaccaacacggccaccacagcatcc
tccaagatcggaacggagcgcgtgtgttccaacccaccttgcgagacgcacgtgactgga
acgaccaacacgacgaccacggcatcatccgacatgggtcgcatgcagcaagtgtgcagc
aacccgccgtgcgaaacccatgaaacgggcaccacaaacacatctacacaggcgtcctcg
aacatgggcatgggaaccaacactgtacagagagtgtgttctaacccaccttgtgagacc
catgaaacgggcaccactaacacatccacacaggcatcttcgagtatgggcactgtgcag
agagtgtgttccaacccaccttgtgagacccatgaaaccggcaccaccaacacatccacg
caagcgtcttcgagtatgggcagcgccgagaccaacaccgtacagagagtgtgttccaac
ccgccttgtgagacccatgaaaccggtaccaccaacacatccacgcaggcatcctcgagt
atgggcagcgctgagaccaacaccgtacagagagtgtgttccaacccgccttgtgagacc
catgaaaccngcaccaccaacacatccacgcaggcatcctcgagtatgggcagcgctgag
accaacaccgtacagagagtgtgttccaacccgccttgtgagacccatgaaaccggcacc
accaacacgtccacgcaggcgtcttcgagtatgggcagcgccgagaccaacaccgtacag
agagtgtgctccaacccgccgtgcgagacccatgagactggcaccactaatacgccaaca
caggcttcatccaccattggggcaggccaaaatggaacggtgcagagagtgtgttccaac
ccgccatgcgagacccacgagaccggcaccactaacacagctactactgccaccagcagc
ctcgaatcagctgaaggatcggcacaacagagtggtaatggacaagatgcaggaaccagc
gtcgaggcaacttcttcgacagaacccaccaatcctccgattcagagcagagccatcacc
actgtgacacaggccacgcccaccccaggaccctctgttccagaaatctcatccatggca
ggctctgctgtagtcgagggctctggtgaagccgaggcaatggagcagggagactccgag
gcagtagcgatgggcgaggagcccatgcaaactgaaggcgaactgggtgaagagggagct
gtcagagttgttgctattgaggagggtgcaacaggggatgggggcaccatgctgcaggtt
catgtagccatggaagctcagcctggccagggagatcagatggagcagggaggtgaaggc
gcggaggccgtggcactggcagggcaggactccgaggcattggcactgcctcaggaactg
atgtcagctgaggggcagcagaccacgctaatggtgactggattgaccccagaggaactg
gcagtcactgctgcagcagaagccgctgctcaggctgcagccacagaagaggctcaggcg
ctcgccatacaggcagtgctgcaggcagcccaacaggctgtgctcaatgaagatgcggga
caggacggtcagcagaccaccaccattcctattgtgttgacgcaacaggaactggctgct
ctggtccaccagcagcagcaactccaagaagtccaagcggcggcggcggcagcagctgca
gccgcagccgcccagcagctaggggccggttcgggcgcagcaactctgcctaccgagggc
ctggcgcctgcggacagccttaacgaccccacgaccgagagcaacggccatgagatggcc
gtcgcagcagtaactggagccgtggctcagcttcttcccagcacttctgcagagacttta
gctccatcgagtacacttgccccagctcagcccatggtggttgccagccctgccaagata
caggctgccactacacttgctgaggtggccaatggcatcgagtctgcagctgggaagcca
ggagtcccccctgcagttgtgaagccaccagtgaagaaggaaaatcagtggtttgatgtt
ggaatcgttaaggtgaccaacacggtcgtcacacactattacatcccagcagacgactcg
gaggtcacagatgatgattctggggccataccagactacagtcaaatgaagaaagtggag
ctctctcctggcaccgcatacaagttccgcgtggctggaatcaatgcgtgcggccgtgga
acgttttctgaagtgtctgcgtttaagacctgtttgcccggcttccctggagcaccatgt
gccattaaaatcagcaagagccctgatggtgctcacctcacctgggaacctccgtctgtg
acctcggggaagatcatagagtactcagtctacctggccatccagagctctcagacgacc
gaggcgaaagcgtctgccccggctcagctggccttcatgcgggtttactgtgggccaaac
ccatcctgccttgtccagacatccagtctgtccaatgcacacatcgactacaccaccaaa
cccgccatcatcttccgcatcgccgcccgaaacgagaagggttatggccctgctacgcaa
gtcaggtggctacaagaaactagtaaagatggatccgctgccaaacctgcagcaaagaga
ccggtctcatcccccgatacgaaaggtaccggtcccaaaaaggccagagccgaccagtga
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integrated database retrieval system
