Silurus meridionalis (southern catfish): 124399650
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Entry
124399650 CDS
T08004
Symbol
hdac6
Name
(RefSeq) histone deacetylase 6
KO
K11407
histone deacetylase 6 [EC:
3.5.1.98
]
Organism
smeo
Silurus meridionalis (southern catfish)
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
smeo01009
]
124399650 (hdac6)
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smeo03019
]
124399650 (hdac6)
04131 Membrane trafficking [BR:
smeo04131
]
124399650 (hdac6)
03036 Chromosome and associated proteins [BR:
smeo03036
]
124399650 (hdac6)
Enzymes [BR:
smeo01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
124399650 (hdac6)
Protein phosphatases and associated proteins [BR:
smeo01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
124399650 (hdac6)
Messenger RNA biogenesis [BR:
smeo03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
124399650 (hdac6)
Membrane trafficking [BR:
smeo04131
]
Autophagy
Aggrephagy
Other aggrephagy associated proteins
124399650 (hdac6)
Chromosome and associated proteins [BR:
smeo03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class II HDACs
124399650 (hdac6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
zf-UBP
Motif
Other DBs
NCBI-GeneID:
124399650
NCBI-ProteinID:
XP_046726689
LinkDB
All DBs
Position
17:complement(26359833..26395795)
Genome browser
AA seq
1093 aa
AA seq
DB search
MDSDQTPKGPKRSPKKTSQGSGKRENSKRSQKPSLQEARNKGRRDRGKAEQEMTNKLGNM
CLQDKPKVTGTGLVYSDVFSRHRCLWDSSHPECPERLSAIVKMMETEGLLSRCVQVETRA
ASEEELSLVHTKEYVEFLKSTQKMTEVELKCVADRYDSVYLHPDSFSCACLAAGSLLQLV
DKVMKSELRNGFAVCRPPGHHAQAEQMNGYSMFNNVAVATRYAQKHHGVQRVLIVDWDVH
HGQGIQYIFQEDPSVLYFSVHRYEEGSFWPHLPEGDSSAVGSGPGEGYNINVPWNKTGME
DGDYVSAFQRILLPVAYEFQPELVLVAAGFDSVAGDPKGEMRVSPQCFSVLTHMLMGLAG
GRIVLALEGGYNLQATAEAACASLRSLLGDACPHLNSSGAPSESALKSISKTLCALYPFW
SSLQTLEGGSLSEAETSPSAVCVEKLESSVQATGLVYDDQMMEHHNMWDSHHPELPQRIF
RIFCHHEDLGLVDRCQRIPARFATEDELALCHGTEYIATIKSTEQMKPRDLKRLGDDYNS
IYISKESYKCALLSAGACFNVVQSILTGQVRNGVAIVRPPGHHAERDTACGFCFFNTAAL
TARYAQRISHDALRVLILDWDVHHGNGIQHIFEDDNSVLYISLHRYDEGIFFPSSEDADY
NRVGRGKGAGYNVNIPWNKAKMGDPEYLAAFHHVVMPIAREFAPELVLVSAGFDAARGDS
LGGYQVTPACYAHLTHQLQSLAAGRVLLILEGGYNLMSISTSMAMCTSMLLGDAPPQLPP
LPPPNHSAIVSINNVLRAHAPYWRSLRIQIPESLRTSLPKIKHTPRGKGKKSPQVTPQPR
PTVTSPTSPPTEQEDSGLDELTQGLHSLDLSTSATSSPASAPVGGARPKVKLSPQTDSSA
VQEVSPIRGIGRGIEDGDVKAESTPIKQEKQVMQSVAPAEGESDARAVSDQESSALGGAC
GYTKKSVFELVCGPVDLAGDTMYVVDPLAWCPHLESVCSVPAGGVDVFRPCEECGTETEN
WICLCCYKVFCGRFVNEHMVAHGQMSSHPLVLSFADLSVWCYVCESYIHNQVLYEAKNAA
HLAKFGEEISPIN
NT seq
3282 nt
NT seq
+upstream
nt +downstream
nt
atggactctgatcaaacaccgaaaggtccgaaacgctccccgaagaaaacatcgcagggc
tctggcaagcgggaaaacagcaaacgcagccagaaaccaagtctccaggaggctcgaaat
aaaggtagacgtgaccgaggcaaagcagaacaggagatgaccaacaaactcgggaacatg
tgtttgcaagataagccgaaggtgacaggaaccggcctggtttactctgatgtcttttcc
cgtcatcgctgcctgtgggattccagtcacccggagtgtccagagagactgagtgctata
gtgaagatgatggagacggaggggctgctgtctcgctgcgtgcaggtggagacaagagct
gcatcagaggaggaactttccctggttcacacgaaggaatacgttgagttcctgaagtcc
acgcagaagatgacggaagtggagctgaagtgcgtcgctgatcgatatgattctgtctac
ctccatcctgactctttctcatgtgcctgtctggctgctggctccctcctccagctggtc
gacaaggtgatgaagtccgagctacgcaatggtttcgccgtgtgcaggcctccaggacac
catgcccaggcggagcagatgaacggatactccatgttcaataacgtagcagtggcgaca
cgttacgctcagaaacatcacggcgtccagcgggttctgattgtggactgggatgtgcat
cacggtcagggaatccagtacatcttccaagaggaccccagtgtcctgtatttctctgta
caccggtatgaggagggttcgttctggcctcacctccccgagggagacagcagcgctgtg
ggatcaggaccaggcgagggctacaacatcaacgtgccctggaacaagaccgggatggag
gacggagattacgtctctgcgttccagagaattctgctgcctgtggcctacgagtttcag
cctgagcttgtattagtggctgctggctttgactccgtagctggtgatcccaagggtgag
atgcgtgtgagcccgcagtgtttctctgtactgacccacatgctgatgggtctggccggg
ggtcgaatcgtgctcgctttggagggaggatataacttgcaggccacagcggaagcggct
tgtgccagtttgaggtcgcttttgggtgacgcctgccctcatctgaactcttcaggagcg
ccgagcgagagtgctctgaagtccatctcgaagacgctttgcgctctgtatccgttttgg
agcagcttgcagactctggagggaggctctctttcagaggcagaaacctcaccctcagct
gtgtgtgtggagaaactggaatcctccgtacaagcgactggactcgtttatgacgatcag
atgatggagcatcacaacatgtgggacagccatcaccctgagctcccgcaaagaatcttc
cggatcttctgccaccatgaagatctggggctggtggatcgttgccagcggatcccggca
cgtttcgctacagaggacgagcttgcgctttgtcacgggaccgagtacatcgctaccata
aagagcaccgagcagatgaagccccgagacctgaagaggctcggagatgattacaattca
atctacatcagtaaagagagctataagtgcgcacttctctcagccggggcgtgtttcaac
gtggtacagtccatccttactggtcaggtgaggaacggtgtggctatcgtacgtcctccg
ggccatcacgcagaaagagacaccgcctgcggcttctgcttctttaacacggctgccctg
actgcccgctacgcgcagcgcatttcccacgatgcattgcgcgttctcatcctcgactgg
gacgtgcaccatggcaacggcatccagcatatcttcgaggacgataacagcgttctctac
atctccctccatcgctacgatgaaggcatcttcttcccctcctccgaggacgccgattac
aacagagtgggccgggggaaaggtgcgggttacaacgtgaacattccctggaacaaagca
aagatgggcgacccggagtatctagcagccttccaccatgtggtgatgccgatcgcacga
gagtttgctccagagctggtcctggtgtcggccgggttcgatgccgctcgaggtgactcg
ttaggggggtatcaggtgaccccggcgtgctacgctcatctcacgcaccagctgcagagt
ctagcagcaggacgagtgcttctcattttagagggaggttataacctcatgtccatctcc
acatcaatggccatgtgcaccagcatgctcctgggtgatgcgcccccgcagctgccaccc
ctgcccccgccaaaccacagcgccattgttagcatcaacaacgtcttgcgagcacatgcc
ccctactggaggtctctccgaatacagattcctgagtctctgcggacgtccttgcctaaa
atcaagcacacgccacgtggaaaaggcaaaaaatctcctcaagtcactcctcaaccgcgt
cccacagtgacctcaccaacatcgccccctaccgagcaggaggactcaggactggacgag
ctcacccaaggcctgcactctctggacctgagcacgtctgccacttccagccccgcctct
gcccctgtgggcggagctagacccaaagtgaagctgagcccacagacggactcgtcagca
gtgcaggaagtgtcgcctattcgaggcatcggaagaggcatcgaggacggcgatgtaaaa
gcagaatccacgcccatcaaacaggagaaacaggtcatgcagtcggtagcgccggcagag
ggagaatcggacgccagggctgtttctgatcaggagagttctgcgcttgggggagcatgt
ggatacacgaagaagtccgtctttgagctcgtgtgtggacccgtggacctggctggggac
acaatgtacgtagtggatcccttggcctggtgcccacacttggagtctgtgtgttcagtg
ccagcagggggcgtcgacgtgttccgcccgtgtgaggagtgtggcaccgaaacggagaac
tggatctgcctctgctgctacaaggttttttgtgggcgtttcgtgaacgagcacatggtg
gcccacgggcagatgtcctctcaccctctggtcctgagcttcgctgatctctcggtgtgg
tgctacgtctgtgagtcgtacatccataaccaggtactgtatgaagccaagaatgcagct
caccttgctaagtttggggaagagatttcccccatcaactaa
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integrated database retrieval system
