Silurus meridionalis (southern catfish): 124399941
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Entry
124399941 CDS
T08004
Symbol
col2a1a
Name
(RefSeq) collagen, type II, alpha 1a isoform X1
KO
K19719
collagen type II alpha
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo04510
Focal adhesion
smeo04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
124399941 (col2a1a)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
124399941 (col2a1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
smeo00536
]
124399941 (col2a1a)
Glycosaminoglycan binding proteins [BR:
smeo00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
124399941 (col2a1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
Motif
Other DBs
NCBI-GeneID:
124399941
NCBI-ProteinID:
XP_046727261
LinkDB
All DBs
Position
17:complement(17696022..17718213)
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AA seq
1493 aa
AA seq
DB search
MFRFVDSRTVLLLVATQCILQTVVRCQREDDQEDIGGCIQDGQHFEDRAVWKPEACRVCV
CDSGSVLCDEVICEELRDCNNPIIPPGECCPICPADQDQTSETFGVKGQKGEPGDIANVQ
GPKGPAGPMGPPGEQGPRGDRGPKGEKGSLGPRGRDGEPGTPGNPGPPGPPGPPGPNPPG
LGGNFAAQMSQGFDEKAGGANLGVMQGPMGPMGPRGPPGPSGAPGPQGFQGSPGEVGEPG
PSGPMGPRGPPGPSGKAGSDGENGKPGKPGDRGPTGPQGARGFPGTPGLPGIKGHRGHPG
LDGAKGETGAAGAKGESGSSGENGAPGPMGPRGLPGERGRPGPSGAAGARGNDGLPGPAG
PPGPVGPAGAPGFPGSPGSKGEAGPTGARGAEGAQGPRGEAGTPGSPGPSGASGNPGTDG
IPGSKGSAGAPGISGAPGFPGPRGPPGPQGATGPLGPKGQSGDPGIAGFKGEAGPKGERG
VVGPQGAPGPLGEEGKRGPRGEPGSAGPLGPPGERGAPGNRGFPGQDGLPGAKGAPGDRG
VAGSSGPKGAGGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPTGGPGEDGRPGPPGPQG
ARGQPGVMGFPGPKGANGEPGKPGEKGLVGSPGLRGLSGKDGETGAAGPPGPAGPAGERG
EQGQPGPPGFQGLPGPGGPPGEGGKPGDQGVPGEAGVPGVVGPRGERGFPGERGSAGSQG
LQGPRGLPGTPGTDGPKGAIGPAGAAGALGPPGLQGMPGERGSAGIPGPKGDRGDSGEKG
PEGAPGKDGGRGLTGPIGPPGPSGPNGAKGETGAIGPTGPAGTRGAPGDRGEVGPPGPAG
FAGPPGADGQSGLKGEQGESGQKGDAGSPGPQGPSGAPGPVGPTGVSGPKGARGAQGAPG
ATGFPGAAGRVGPPGPNGNPGSSGPAGPAGKDGPKGVRGDAGPPGRPGDAGLRGPSGPPG
EKGEAGEDGPPGPDGPSGPAGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGGPGSSG
ERGPPGPIGPPGITGPAGEPGREGNPGSDGPPGRDGAAGVKGERGNTGPVGSPGAPGAPG
SPGPVGPVGKQGDRGENGPQGPSGPSGPAGARGMAGPQGPRGDKGEAGEAGERGQKGHRG
FTGLQGLPGPPGAPGDQGAAGPAGPSGAKGPHGPVGPAGKDGANGIPGPIGPPGPRGRSG
ESGPAGPPGNPGPPGPPGPPGPGIDMSAFAGLGQTEKGPDPMRYMRADEASNNLRQHDVE
VDATLKSINSQIEDIRSPDGSRKNPARSCRDLKLCHPDWKSGEYWVDPNLGCTADAIKVI
CNMETGETCVKPTTGSIPRKNWWSAKSKGQKHIWFGENMGGGFHFSYGEKAPTPNVANIQ
MNFLRLLSSEASQSITYHCKNSVAYMDGVTGNLKKALLLQGSNDVEIRAEGNSRFTYSVV
EDGCKKHTGQWGKTVIEYTTQKTSRLPIVDIAPLDIGGANQEFGVDIGPVCFL
NT seq
4482 nt
NT seq
+upstream
nt +downstream
nt
atgttcagatttgtggactcacggactgtcctgctacttgtagcgacacaatgtattttg
caaaccgttgtcagatgtcagcgagaggatgaccaggaagacataggcggctgcatccag
gatggccagcatttcgaggaccgtgcagtttggaagcctgaagcgtgtcgggtctgtgtg
tgtgactcgggatcagtgctctgtgatgaggtcatctgcgaggagctgagggattgcaac
aatcctatcattccacctggagagtgctgccccatctgccctgctgaccaagaccaaact
agcgagacctttggtgtaaaggggcaaaaaggagaacccggtgatattgcaaatgttcaa
ggaccaaaaggaccagctggccccatgggaccacctggagaacagggaccacgtggagac
agaggccctaagggtgagaagggaagtctaggacccagaggaagagatggcgagcccggc
actccaggaaaccctggaccccctggacctcccggaccaccaggcccaaacccacctgga
cttggaggaaactttgcagcacaaatgtctcaaggttttgatgagaaagctggaggagct
aacttgggtgtgatgcaaggtccaatgggccccatgggtccccgtggtcctcctggtccc
tctggagcacctggcccacaaggtttccaaggcagcccaggagaagttggcgaacccgga
ccttctggccctatgggacctcgcggcccacctggaccatctggaaaagctggaagtgat
ggtgagaatggcaaacctggtaagcctggtgaccgtggacctactggaccacagggagca
cgtggattccctggaacccctggacttcctggcatcaagggacacagaggacacccaggt
cttgatggtgccaagggagagactggagctgctggtgctaagggtgaatcaggttcatct
ggtgagaatggcgcccctggaccaatgggccctcgtggtcttcctggtgagagaggacgt
cctggaccatctggagctgctggtgcccgtggtaatgatggtcttcctgggcctgctggt
cctcctggacctgttggccctgctggtgccccaggtttcccaggatcccctggttccaag
ggtgaggccggacctactggtgctcgtggagctgagggagcccaaggaccccgtggagag
gctggaactccaggatcccctggaccttctggagccagtggtaaccctggtactgatggt
attcctggatccaaaggatctgctggtgcccctggtatttctggtgccccaggtttccca
ggacctcgtggcccacctggacctcagggagctactggacctcttgggcccaagggtcag
agtggagaccctggtattgcaggatttaagggagaggctggaccaaaaggagagaggggt
gtggtaggacctcagggtgccccaggcccacttggtgaggagggcaagagaggaccaaga
ggagagcccggttcggctggacctcttggaccaccaggagaaagaggagctccaggtaac
cgtggattccctggtcaagatggtcttcctggtgctaagggtgcacctggtgaccgtggt
gttgctggatcatctggaccaaaaggtgctggtggagatcctggtcgtcctggtgagcct
ggtcttcctggagcaagaggtctcacaggtcgtcctggagatgctggaccccaaggaaaa
gttggcccaactggtggtccaggtgaggatggtcgtcctggtccccctgggcctcaggga
gctcgtggacagcctggtgtgatgggattcccaggacccaagggagctaatggtgagcct
ggcaaacctggcgagaaaggacttgttggcagccctggtctcagaggtttgtctggtaaa
gatggtgaaactggggctgctggtcctcctggccctgctggacctgctggagagagaggt
gaacaaggacagcctggtcctcctggcttccagggtctacctggacctggtggaccacca
ggagagggcggcaaaccaggtgaccagggtgttcctggagaggctggtgtccctggtgta
gttggaccaagaggtgagcgtggtttccctggtgagagaggaagtgctggatcacagggt
cttcagggacctagaggacttcctggaactcctggaactgatggacccaagggtgcgatt
ggcccggctggtgctgctggtgccctgggtcctcctggactgcagggtatgcctggtgaa
agaggtagtgctggtatccctggacctaagggtgacagaggtgactctggagagaaagga
cctgagggagctcctggcaaagatggtggaagaggtttaactggccctattggtccacct
ggtccttctggtcccaatggagctaagggtgaaactggtgctattggcccaactggacct
gctggaactcgtggtgcacctggtgaccgtggtgaggttggacctcctggccctgctggt
tttgctggaccccctggtgctgatggccagtctggacttaaaggagagcagggagagtca
ggccagaaaggagatgctggatcccctggacctcaaggaccctctggagcacccggtcca
gttggcccaactggtgtttctggacctaaaggagctcgtggagcacagggagccccaggt
gctactggtttcccaggcgctgctggaagagttggacctcccggtcctaatggtaatcct
ggctcctctggccctgctggtcctgctggtaaagatggccctaagggagtgcgtggtgat
gctggtcctccaggaagaccaggagatgctggactgcgtggaccttctggaccccctgga
gagaagggagaagctggagaggatggccctcctggacctgatggtccttctggtcctgca
ggtttagctggtcagcgtggtattgttggtctgcctggtcagcgtggtgaaagaggtttt
cctggtcttccaggaccatctggtgagcctggcaaacagggtggacctggttctagcggg
gaacgtggcccccctggaccgattggacccccgggaataactggacctgctggagaacct
ggccgtgagggtaatcctggatctgatggtcctcctggcagagatggagctgctggtgtg
aagggtgaacgtggtaacaccggccctgttggttcacctggtgctccaggtgcccctgga
tctcctggtcctgttggtcctgtaggcaaacagggagacagaggagaaaatggaccccaa
ggaccttctggaccctctggacctgctggagcaagaggcatggctggaccccaaggtcct
cgtggagacaagggagaggctggtgaggctggagaaagaggacagaagggacacagagga
ttcactggtctgcagggtcttcctggacctcctggtgctcctggtgaccagggtgctgct
ggacctgccggacctagtggcgctaaaggaccccatggacctgttggcccagctggaaag
gatggtgcaaatggtatccctggacccattggaccccctggacctcgtggacgttctggt
gaatctggcccagctggtcctcctggtaaccctggaccccctggtcctcctggtcctcca
ggccctggcattgatatgtctgccttcgctggactgggtcagacagagaagggccccgat
cctatgcgttacatgcgtgctgatgaggcttccaacaatctgagacagcatgatgtggag
gttgatgccaccctcaaatccattaacagccaaattgaggatatccgcagccctgatgga
tctcgcaagaaccctgctcgctcctgccgtgacctgaaactctgccaccctgattggaag
agcggtgaatactgggtggatcctaaccttggctgcactgctgatgccatcaaggtcatt
tgcaacatggagactggagagacatgtgtgaagcctactacaggcagtatcccacgcaag
aactggtggagcgccaaaagcaagggtcagaagcacatatggttcggcgaaaacatgggc
ggtggcttccatttcagctatggtgagaaggccccaactccaaatgtggccaacattcag
atgaacttcctgagactgctatctagcgaggcctctcagagcatcacctaccactgcaag
aacagcgtggcctatatggatggggtcaccggcaatctgaagaaggctcttctgttacag
ggctccaacgatgtggaaatcagagcagagggtaacagccggttcacatacagtgttgtg
gaggatggctgcaagaaacatacaggccagtggggcaagactgtgattgagtacacaact
cagaagacatctagactgcccattgtggacattgctcctttggacatcggtggagctaat
caggagtttggagtggacattggaccagtctgtttcttgtaa
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integrated database retrieval system
