Silurus meridionalis (southern catfish): 124399957
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Entry
124399957 CDS
T08004
Symbol
ercc8
Name
(RefSeq) DNA excision repair protein ERCC-8
KO
K10570
DNA excision repair protein ERCC-8
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo03420
Nucleotide excision repair
smeo04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
124399957 (ercc8)
09124 Replication and repair
03420 Nucleotide excision repair
124399957 (ercc8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
smeo04121
]
124399957 (ercc8)
03400 DNA repair and recombination proteins [BR:
smeo03400
]
124399957 (ercc8)
Ubiquitin system [BR:
smeo04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
124399957 (ercc8)
DNA repair and recombination proteins [BR:
smeo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Cul4-CSA complex
124399957 (ercc8)
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Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
EIF3I
Beta-prop_RIG_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EIPR1
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR75_1st
WDR55
Beta-prop_EML
ANAPC4_WD40
Beta-prop_TEP1_C
NBCH_WD40
WDR90_beta-prop_4th
Beta-prop_Vps41
Beta-prop_WDR19_1st
WD40_MABP1-WDR62_1st
Beta-prop_SPT8
WD_LRWD1
Beta-prop_WDR35_TULP_N
Beta-prop_RIG_1st
Beta-prop_IFT122_1st
Beta-prop_IFT140_1st
WD40_RFWD3
Beta-prop_HPS5
Beta-prop_SCAP
Beta-prop_IFT140_2nd
Ge1_WD40
Nucleoporin_N
Motif
Other DBs
NCBI-GeneID:
124399957
NCBI-ProteinID:
XP_046727304
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Position
17:21988678..22001579
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AA seq
397 aa
AA seq
DB search
MLSFLTARQTGVDDPVRLRRAESTRRVLSLELNHDRDVERIHGNGVNCIDIEVIEGRYML
SGGSDGVIVIYDLENSTKKSHYTCKAVCTVGRSNRHVHKFSVETVQWYPYDTGMFVSSSF
DKSMKVWDTETLKPADVFQFDGNVYCHHMSTIARKHSLIAVGTKDPKVQLCDLKSGSRIH
VLQGHRGEILSVQWSPRYEHILATASTDGRVRMWDVRRAAGSLFTLDQFNGDKSKASSEA
VNTAHNGRVNGLHFTDDGLYLLTTGTDDRMRLWNSATGHNTLVNYGKVVNESRKGVKFTV
SRGCSPEFVFVPCGTSVAVYGLYTGELVTTLRGHYNNVDCCKFHPDYQVLYSGGKDCNIL
AWVPVLRQPDVEDEAKTGGAQAAVNPAFEDAWSSEED
NT seq
1194 nt
NT seq
+upstream
nt +downstream
nt
atgttgagcttccttacagccagacaaacaggtgtggacgatcctgtgcgcctgagaaga
gcagaatcaacaagaagggtgctgagtttggagttaaatcatgacagagatgttgaacga
attcatggcaatggagtgaactgtattgatattgaagtgattgaaggcagatatatgtta
tcagggggttctgatggtgtaatcgtgatctacgatctggaaaacagcaccaaaaagtca
cactacacttgtaaagcagtttgcactgttggcaggtcgaatcgtcatgtgcacaagttc
agtgtggagacggtgcagtggtatccgtatgacactggcatgtttgtgtccagctcattc
gacaaaagcatgaaagtttgggacacagaaacactcaaaccagctgatgtcttccagttt
gacggcaatgtctattgccaccacatgtctactattgccaggaaacacagtctcatagca
gttggtaccaaagacccaaaagttcagctgtgtgatctgaagtctggttctcgcattcac
gtcttgcaaggtcacagaggagagattctctctgtccagtggtctccacgctacgagcac
atcctggctactgctagcactgatggcagggtgcgtatgtgggatgtgcggcgagctgct
ggaagcctctttacattagatcagtttaatggggacaagtctaaagcctcatctgaagca
gtaaacacggcccataatggacgtgtaaacggtttgcacttcactgatgatggtctttac
ctcctgaccactggcacagatgatcgtatgcgcttgtggaacagtgccacaggccataac
acattggtaaactacgggaaggtggttaatgagagccggaaaggtgtgaagtttaccgtg
tcgcgaggctgcagcccggagtttgtgtttgtgccatgtggcacctcggttgcagtctat
ggcctttacacaggggagctagtgacgacattaagggggcattacaataatgtagactgc
tgcaagttccacccagactatcaggtgctctacagtggtgggaaggactgtaatatcttg
gcctgggtccctgtgctacgccaacctgatgttgaggatgaggcgaaaacgggtggagcc
caagctgcagttaatcctgcttttgaagatgcctggagcagtgaggaagactga
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