Silurus meridionalis (southern catfish): 124400050
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Entry
124400050 CDS
T08004
Symbol
rapgef1a
Name
(RefSeq) rap guanine nucleotide exchange factor 1 isoform X1
KO
K06277
Rap guanine nucleotide exchange factor 1
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo04510
Focal adhesion
smeo04910
Insulin signaling pathway
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
124400050 (rapgef1a)
09150 Organismal Systems
09152 Endocrine system
04910 Insulin signaling pathway
124400050 (rapgef1a)
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Gene cluster
GFIT
Motif
Pfam:
RasGEF
RasGEF_N
Motif
Other DBs
NCBI-GeneID:
124400050
NCBI-ProteinID:
XP_046727501
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Position
17:complement(22559385..22589902)
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AA seq
1081 aa
AA seq
DB search
MSGKLDSKQDSQRSNLQTFTMRLIDRFSSPKPKRVHSSKKTSKPSIERVVKTPEKQETKH
LSQLEEKEKEVVSALRYFKTIIDKMVVDRKVLEMLPGSASQVLEAIMSVVQIDPKIQKSS
SVSSCLNRVYQSLANLICWSDQVMLEGVDLEEKDTVANVTSIIKAVLDGVKELVKLVLEK
QQLPSPTSPTAKNVPSVISPESVPEPPVIETEDESSTNSSALSRSTEALTDAPTAEEAAP
PKPPLPGLKVPEHCPPALPPKKRQSAPSPTRVAVVAPMSRATSGSSLPIGIGKQDYDADG
LQRRFSGGSHSYGGESPRSSPCGSMGKLSKSDEQLSSLEQDSGQCSRNTSCETLDTAESY
DPDYDFLREDLSSVDQIALPAGSCLSPLPESHREQCSSPSPGQIHYGSLSLNHSTAPLHH
TLITPPALPQKKRRSGNQQIPFDGSTPRTGYERLHSHYDNVTDEEMPVPPFPLIPLFAPV
VGYGADFVTSENASVSQSPPPLPEKKSRHILKYMQFMEDYSEPQPSVFYQTPQSESIYEQ
RNRLIQEVYGFNDSFSSNDSVHEPLPPPALPPKQRQLASSHSASPSSSSSSSLSCQLQQG
GGSGSAEVDTALSLSASSSSLGCPASPPAATDPNCGTEDSLQDSASDHNKEPTDSDSWKQ
KCVESDLSTEELDELSLVDHNEIMSRITLKQESDDGPDVRAGSKDILLVHATETDLVLYC
EAFLTTYRTFLTPEDLIKKLHYRYTKFSHSSDNIKKRVSKNTFFVLVRVVDELCLVELTE
DILKQLMDLVISLVRCGELSLARVLRKNVLEKVEQKRLLSYTNSMKTLAARSVAARPGTL
HDFRSHEIADQLTLLDAELFYKIEIPEVLLWAKEQNEEKSPNLTQFTEHFNNMSYWVRSI
IILQEKAQDREKLLLKFIKIMKHLRKLNNFNSYLAILSALDSAPIRRLEWQKQTSEGLEE
YCTLIDSSSSFRVYRAALAEVEPPCIPYLGLILQDLTFVHLGNPDYIAGKVNFSKRWQQF
NILDSMRRFQQVHYDLKHNEDIVSFFNDFSDHLAEEALWELSLKIKPRNITRRKTEREEK
T
NT seq
3246 nt
NT seq
+upstream
nt +downstream
nt
atgtctgggaaactcgacagtaagcaagactctcagcgctccaacctacaaaccttcaca
atgaggctaatagatagatttagctcccccaagccaaaaagagtacattcgtcgaagaaa
acatcaaagccttcaatagagcgagttgtgaagactcctgagaagcaagaaactaagcat
ctcagtcagttggaggaaaaagagaaagaagtggtcagtgccttgcgttacttcaagacg
ataatcgataagatggtggtggaccgaaaagttttggagatgcttccaggctccgccagt
caagttttggaggcgatcatgtctgtagtgcagattgaccccaagattcagaaaagttcc
tcagtgtcatcctgtctcaaccgagtgtatcagagtctggccaacctcatctgctggtct
gatcaggtgatgctagagggagtggacctggaagagaaggacactgttgcgaatgttact
agcatcatcaaagcagtactggatggggtgaaggaactggtgaagctggtcttggagaaa
cagcagctcccctccccgacatcacccacagccaaaaatgtcccatcagtcatcagccca
gagagtgttccagagcctccagttatagagacggaagatgagagctctacaaactcctct
gcactaagtcgttccaccgaggccctgactgatgcccccactgccgaagaagcagcgcct
cccaagcccccactccctggcctcaaagtgcccgagcattgtccaccagctcttcctcct
aagaagcgccagtcagcgccatctcctacccgagtcgctgttgttgctccgatgagccgt
gccacaagtgggtcgagtcttcctattggcatcggcaaacaggactatgatgcagatggt
ttacagcggcgtttttccggcggtagccattcatatggtggcgagtcaccacgcagctct
ccttgcggtagcatgggtaaactgagcaaatcagacgagcagctgtcctctcttgagcag
gacagtgggcagtgctctcgcaacactagctgtgagacgctggatacagcagagagctac
gacccagactatgacttcctcagagaagacctgtccagtgtcgatcagatcgctctgcct
gccggaagctgtctcagccctctccccgagtctcatcgggagcagtgttcttcaccatct
ccaggccagattcactacggttctctctctctcaatcactccaccgctcctcttcatcac
actctcatcacaccacctgctctgccgcaaaagaagcggcgcagcggcaaccagcagatc
ccctttgatggctcgacacctcgaacaggatacgagcgcctacactcccactacgacaac
gtcacagacgaggaaatgcccgtgccgcctttccctctgatccctctcttcgcccctgtg
gtcggatacggggcggactttgtcacctctgagaatgcgtccgtgtctcaatctcctccc
cccctacctgagaaaaagagcagacacatcctgaagtacatgcagtttatggaggattat
tcggaaccacagccttccgttttctaccagacgccacagagcgagagcatctatgagcag
cgcaaccggctcatacaggaagtgtacggcttcaacgactcgttcagcagcaatgactct
gtgcatgagcccctccctcctccggcactcccacccaaacagaggcagctggcctcctct
cactctgcatctccttcctcatcctcctcttcctctctgtcgtgccagcttcagcaaggt
ggaggctcaggttctgctgaggtggacactgctctcagtctgtccgcctcaagctcctct
ctgggctgcccggcttctcctcctgctgccacggaccccaattgcggcacggaggactcg
ctccaggactctgcctcggatcacaacaaggagccgactgactcggacagctggaaacag
aagtgtgtagagtcagacctgagcacagaggagctggacgagctgtcgctggtggatcat
aatgagatcatgtcccgcatcacactaaagcaagagagcgatgatggaccagatgtccga
gctggatcaaaggacattttattagttcatgcaacagaaacagatcttgttttgtactgt
gaagccttcctgacgacgtacaggacgtttttaaccccagaggacctcattaaaaagctc
cactatagatatacaaaattttctcacagttcagacaacattaagaagcgagtcagcaaa
aacactttcttcgtgctggtgcgtgtcgtggatgaactttgtttggtggagctgacagaa
gacattctgaagcagctgatggacctggtgatcagtctggtacgttgcggagagctcagt
ctggcccgtgtcctccgcaagaacgttctggagaaagtggagcagaagaggttgcttagc
tacactaactcgatgaagacgctagctgcccgcagcgttgcagccagacccggtacactt
catgacttccgtagccacgagatcgcagaccagctcactctcttggacgcggagctgttc
tacaaaatagagatccctgaggtcctgttgtgggcaaaagaacagaatgaagagaagagc
ccgaatctcacccagttcacagaacacttcaataatatgtcttactgggtgcgttctata
ataatcctgcaagaaaaagctcaagaccgagaaaaactccttctcaagtttatcaaaatc
atgaagcacttacgaaaacttaataactttaactcctacttggcaatactgtcagctctg
gattcagctcctattcggagactagagtggcaaaagcaaacctcggagggtctggaggag
tactgcactttaatcgatagctcgtcatcattccgggtgtacagagcagccttggcagaa
gtcgagcctccctgtataccctacctaggtctcatccttcaggacttaacctttgtgcac
cttgggaatcctgactacattgccgggaaggtgaacttttcaaaacgctggcagcagttc
aacatcctcgacagcatgcgccgttttcagcaagtacattacgatctcaaacacaacgaa
gacatcgtgtccttcttcaacgactttagcgaccatctcgccgaggaggcgctgtgggag
ctttccctgaagatcaagccgcggaacatcacgcgccgcaaaacagagcgcgaggaaaag
acgtag
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