Silurus meridionalis (southern catfish): 124400053
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Entry
124400053 CDS
T08004
Name
(RefSeq) DDB1- and CUL4-associated factor 1-like isoform X1
KO
K11789
DDB1- and CUL4-associated factor 1 [EC:
2.7.11.1
]
Organism
smeo
Silurus meridionalis (southern catfish)
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
smeo01001
]
124400053
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
smeo04121
]
124400053
Enzymes [BR:
smeo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
124400053
Protein kinases [BR:
smeo01001
]
Serine/threonine kinases: Other
Other
124400053
Ubiquitin system [BR:
smeo04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
124400053
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
Beta-prop_EML_2
WD40_CDC20-Fz
EIF3I
WD40
LisH
Beta-prop_WDR19_1st
ANAPC4_WD40
Beta-prop_WDR90_POC16_2nd
Motif
Other DBs
NCBI-GeneID:
124400053
NCBI-ProteinID:
XP_046727506
LinkDB
All DBs
Position
17:9604687..9620418
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AA seq
1542 aa
AA seq
DB search
MMASAPEGSVDSKAELTALLEQWEREQQGNSQDLVNILTKISELVERETEEYHKADPDPF
DDRHPGRANPECMLGHLLKILFKNDDFMNALVNSYVMTSREVPLNTAACRLLLNIMPGLE
TAVVFQEKEGIVERLFKWAREAEEPLRIYATGLLAGAMENQDIAANYREENSVLVPLMLQ
RLRELQEKEAESRKDFKRKSSLRKSMEPLLPLDEEAVDGKFSPSPTHNHSENNSFGHESD
DAVSPEPSLTQKSSSRIHSGVKGVMKLPMPHQSDLENPSEGAKDFRKRLERENGRKAKQK
LNFSLPDPERTFSELSNSSWSEMSPWVIGNNYHLYPLIPGIEQRLILQYLTPLGEYQELL
AVFMQLGARELLMHYMDLKQTNDVQLTFEALKYLASLLLHKKFAAEFVAHGGVQKLLEIP
RPSMAATGVSLCLYYLAYNQDAMERVCMLPHSLLAEVVSYTLWLLECSHASGCCHATMFF
SICFSFRAVLELFDNQDGLRRLVNLISTLEILNPEDQGALLSDDEIFSSRQTAKHTCMAL
RRYFEAHLAIKVEQVKQSLQRTEGGAPIHPQPYYKPCSYTHDQVVEMVEFLIEHGPVRLY
WEPAEVFHKLSCVQLLLQLISIACDWRTYYGRSDTVRYALDILSILTVIPKTQLLLAENV
AVLDEGGSTISTVGMSIILVVAEGEVFVNDAEIQKSALQVVINCVCAPDKRISSIGKFIS
GAPRRRLPQSHRTSESVLAKMWNVVQSNNGIKVLLSLLTIKMPITDADQIRALSCKALVG
LARSTTVRQIISKLPLFSSGQIQQLMKEPVLQDKRNDHVRFCKYAAELIEQVSGKPLLIG
TDVSLARLQRANVVAQTRITFPEKELLLLVRNHLLSKGLTDTASALTKEADLPMGLHSHA
HASVVPFSQTVSTPPTPSAIPRTPRLANGVAARLGGHASHGPTSSLHLQPRPSTSQPPPP
APPVSSHHSTGSPLVGRIVFSRERPSTYTAGLKKPRVLRQKSDHGAFSQSPAMKKQLDRH
LPSPPALDSIITEYLREQHARCKNPVTTCPPFSLFMPHQCPEPKQRCQAPINFTARHTRR
VAYPKYGGVDGGCFDRHLIFSRFRPISVFREAEEDESGFMCCAFSARERFLMLGTCTGQL
KLYNVFSGQEEASYSCHSSAITHLEPSRDGSLLLTSASWSYPLSALWGMKSVFIMKHSFL
DDHYVEFSKLSQDRVIGTKEHIAHIYDIQTGQKTLTLNNPDLANNYKRNCATFNPTDDLV
LNDGVMWDVRSAQAIHKFDKFNMNISGVFHPNGLEVIINTEIWDLRTFHLLHTVPALDQC
RIVFNNNGTVIYGAMLQADDEDEMMEQQMKSPFGSSFRTFDATDYKPIATIDVKRNIFDL
CTDTKDCYLAVIENQDSINMDTVCRLYEVGRQRLAEEEEDEEDQEDEDQEDEDDDDSDDD
MDDLDTDPLMAELENENNGEEEEEDGEQDFSPSDDEEVARLLEEEGDDDDDDDDDDDDDD
DDDDDEEDDSEDNEGDVELVMDNTDSSDNSDLEDDIILSLNE
NT seq
4629 nt
NT seq
+upstream
nt +downstream
nt
atgatggcgtctgcccccgaaggcagcgtggactccaaagcagagctcacagcattgctg
gagcaatgggagcgagaacaacaaggcaatagtcaggacctggtcaacatattgaccaaa
atatcagaacttgtggagagggagactgaggagtaccacaaagctgatccagacccattt
gatgaccgccatccaggacgggcaaacccagagtgcatgctgggacacctgttgaagatc
ttatttaagaatgatgactttatgaatgcgttggtgaactcgtatgtcatgacaagcaga
gaagttccattaaacaccgcagcatgtcgccttttgttgaacatcatgcctggcctggag
actgcagtggtctttcaggagaaggagggtattgtagagcgcctgtttaaatgggctcgg
gaggctgaggagcccctgagaatctatgctacaggtttgcttgcaggagccatggagaat
caggacattgctgccaactaccgtgaggagaactctgttctggttcctttaatgctacag
aggcttagagaactccaggagaaagaggctgaaagcaggaaagacttcaaacgtaagagc
agtctccgcaagagcatggagcccctgctccctctggatgaggaagcagtggatggaaag
ttttcgcccagccctacacacaatcactcagaaaataacagctttgggcatgaatcggat
gacgcggtttcacctgagcccagtttaacccagaaaagcagcagccgaatccactctggt
gtcaaaggggtgatgaaattgccaatgccgcaccagtctgatttggagaaccctagcgag
ggagcaaaagattttaggaagaggttggagcgagagaatggcagaaaggccaaacagaag
ctgaacttctcgttgccagacccagagcgcacctttagcgagttgtccaacagcagctgg
tcagagatgagcccatgggtgattgggaacaactaccacttgtatccacttataccaggc
attgagcagcgtctcattcttcagtacctcacaccattgggggagtaccaggagctgttg
gctgtgttcatgcagcttggtgctcgagagctcctcatgcattacatggatctaaaacag
accaacgatgtacaattaacctttgaggccctcaagtatctggcctctctcctgctgcat
aagaagtttgcagcagagtttgtggctcatggtggagtgcagaagcttttggaaatccca
cggccatccatggctgccactggagtctctctttgtctttattatcttgcctataaccaa
gatgctatggaaagagtgtgtatgctaccacactccctcctagcagaggtggtgagttac
actctgtggctgttggagtgttctcatgcttccggttgctgtcatgctaccatgttcttc
tccatttgcttctcgttccgagctgtgcttgagctcttcgacaaccaggatggcctcaga
cgtcttgtcaacctgataagcactctggagatcttgaatcctgaagatcagggggcactg
ttgagcgatgatgagattttctctagcaggcagacagccaaacacacgtgcatggctctt
cgccggtactttgaagcccacctggccattaaagtggaacaagtgaagcagagtctacaa
cgcacagagggaggagcacctattcatccccagccttactacaagccttgctcctacact
catgatcaggtggtggaaatggtagaattccttattgagcatgggcctgtgcgcttgtat
tgggagcctgccgaggtcttccacaaactgtcctgtgtacaactccttctgcagctcatc
tccatcgcctgtgactggaggacatattacggcaggagtgacacagtgcgatatgcactg
gacatcctcagtattctgactgttatcccaaaaacgcagctccttttggctgaaaacgtg
gctgtgctggatgaaggaggctctaccatctccacagtaggcatgagcatcatcctggta
gtagccgaaggtgaagtgtttgtgaacgatgctgagatccagaagtcagctcttcaggtg
gtgattaattgtgtgtgtgctcctgacaagcgcatctctagcatcggtaaattcatctca
ggagcaccacgacggcgtcttccccagagccaccgcaccagtgaaagcgtcctagccaaa
atgtggaatgtggtccagtccaataatggcatcaaggtcttgctctcgctcctcacaatc
aaaatgccgataacggatgccgaccaaattcgcgcattatcgtgcaaagcgttagtgggt
ttagcacgaagcaccaccgtgaggcagattattagcaagttaccgctgttcagcagtggg
cagatccagcagctaatgaaggagcctgtgcttcaagacaaacgcaatgaccatgtccgc
ttttgcaaatatgctgctgagctcattgagcaagtgtctggaaagccgctgctaattggc
acggatgtttcactagcacggttgcagcgtgccaatgttgtagcacaaacgcgcatcaca
ttccctgagaaggagttgcttctgcttgtccggaatcatctgttgtcaaaaggtctaact
gatacagcttcagcactaaccaaagaggctgatttgcccatgggccttcattctcatgct
catgccagcgtagtaccattttcacaaactgtgtccacgccccccacaccatctgccatc
ccacggactcctcgcctcgccaatggcgtggcagcacggctaggaggccatgcctctcat
gggccgacttcatctcttcatttacagccccggccatctacctcacaacccccaccccca
gcccctcctgtgtcatctcaccacagcactggctctcctcttgttggaagaatcgtgttc
tcgagggaacggccatctacctatactgcaggattgaagaaaccacgtgttttgaggcaa
aaatccgaccatggtgcgtttagccagagtccagctatgaagaaacagttggatcgccac
cttccttcacctccagctcttgatagtattataacggagtacctgcgagagcagcatgct
cgttgtaaaaacccggtcaccacgtgccccccgttcagtctcttcatgccccaccagtgt
ccagagccaaagcagagatgccaggcacccataaactttactgcacgtcacacacgcagg
gtcgcctatccaaaatatggaggggtggatggaggctgcttcgacaggcatctcatcttc
agcaggtttaggccaatctctgtattcagggaagcagaggaagatgagagcggcttcatg
tgttgtgcattctcagcaagggagcgtttcctcatgttgggcacatgcactgggcagctc
aaactttacaacgtatttagtggacaagaggaagccagttacagctgccatagttcagcc
attacacaccttgagccatccagggatgggtctttactgttaacatctgcttcatggagt
tatcctttatctgccctctggggaatgaaatctgtcttcataatgaagcattccttttta
gatgatcattatgtggaattcagtaagctctcccaggacagagtaataggaacaaaggaa
catattgcccatatttatgacattcaaactgggcagaagaccctcactttaaacaaccct
gacctggcaaacaactataagcggaattgtgctactttcaatccaactgatgaccttgtc
ttaaacgatggggttatgtgggatgtgcgttcagcacaggccatccacaagtttgataaa
ttcaacatgaacatcagtggcgttttccaccccaatggccttgaagtcatcatcaacaca
gagatctgggacttaaggactttccatttgctgcacactgtaccagcactggatcagtgc
agaattgtgttcaacaacaatggaacagtcatttatggagccatgcttcaggctgatgat
gaggatgaaatgatggagcagcagatgaaaagtccctttggatcctccttcagaaccttt
gatgctactgactacaaaccaatagccaccattgatgtgaagaggaacatttttgacctc
tgcaccgacacaaaggactgttacctggcagtcattgaaaaccaagattctataaatatg
gacacagtgtgtcgactttatgaagttggccggcagagactggctgaggaagaagaggac
gaggaggatcaggaggatgaagatcaggaggatgaggatgatgatgactccgatgacgac
atggatgatcttgacacagaccccctgatggctgagctggaaaatgagaataatggtgag
gaggaggaggaagatggtgagcaggatttttccccatctgatgatgaagaggttgctcgt
ctcctggaggaagagggtgatgacgacgacgatgatgacgacgacgacgacgatgacgac
gacgatgacgacgacgaagaggatgattctgaagacaacgagggagatgtagaattggtg
atggataatacagatagctctgataactcggatctggaagatgacataatcctttccttg
aatgagtga
DBGET
integrated database retrieval system
