KEGG   Silurus meridionalis (southern catfish): 124400126
Entry
124400126         CDS       T08004                                 
Name
(RefSeq) TATA-box-binding protein
  KO
K03120  transcription initiation factor TFIID TATA-box-binding protein
Organism
smeo  Silurus meridionalis (southern catfish)
Pathway
smeo03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:smeo00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    124400126
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:smeo03000]
    124400126
   03021 Transcription machinery [BR:smeo03021]
    124400126
Transcription factors [BR:smeo03000]
 Eukaryotic type
  beta-Scaffold factors with minor groove contacts
   TATA-binding proteins
    124400126
Transcription machinery [BR:smeo03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     124400126
  RNA polymerase III system
    TFIIIB
     124400126
  RNA polymerase I system
    SL1/TIF-1B
     124400126
SSDB
Motif
Pfam: TBP ANAPC_CDC26 NUDE_C TFIIA
Other DBs
NCBI-GeneID: 124400126
NCBI-ProteinID: XP_046727693
LinkDB
Position
2:complement(14005120..14010614)
AA seq 305 aa
MEQNNSLPSFPQSLASPQGAMTPGIPIFSPMMPYGSGLTPQPVQNTNSLSILEEQQRQQQ
QQQQQQAAASQQQSGIVGTSGQTPQFYHSQAVSTTTALPGNTPLYTTPLTPMTPITPATP
ASESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIF
SSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLV
LTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRGEIYEAFENIYPILKG
FRKTT
NT seq 918 nt   +upstreamnt  +downstreamnt
atggagcaaaacaacagcttgccttcattcccacaaagccttgcgtcgcctcagggggcc
atgacgcctggtatccccatctttagccctatgatgccttatgggtcagggcttacacca
cagccagtacaaaacaccaacagcttatcaattttagaggagcagcaaaggcagcaacag
caacaacagcagcagcaggcggcagcatctcaacagcagagtgggatagtgggaacatca
ggccagactcctcagttttatcactcacaagctgtttctactacaacagcactgccagga
aacacccctctctacacaacccctctcacacctatgacccccatcactcctgccacacct
gcttcagaaagctctggcattgtccctcaactacaaaatattgtctcaactgtgaatttg
ggatgcaaacttgacctgaagacaatcgcactacgagccaggaatgctgaatataaccca
aagcgttttgcagccgtcatcatgagaatacgagaacccagaacaactgctctgattttc
agttcaggcaagatggtctgcacaggagctaagagcgaggagcagtctcgtctggctgcc
aggaaatatgcaagagtagtgcagaaactgggtttccctgccaaatttctagactttaag
attcagaacatggttggaagttgtgacgtcaagtttccaatccgactcgagggtctggtt
ctcacccatcagcagttcagcagttatgagccagagttattccctggtttaatctacaga
atgattaaacccagaattgtgcttttaatattcgtttcaggcaaagttgtactcacaggt
gcaaaagtgaggggtgaaatttatgaagcatttgaaaatatatatcctatcttaaaagga
ttcagaaagactacataa

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