Silurus meridionalis (southern catfish): 124400354
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Entry
124400354 CDS
T08004
Symbol
smarcad1a
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1A isoform X1
KO
K14439
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 [EC:5.6.2.-]
Organism
smeo
Silurus meridionalis (southern catfish)
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
smeo03036
]
124400354 (smarcad1a)
Chromosome and associated proteins [BR:
smeo03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
124400354 (smarcad1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
CUE
HDA2-3
DEAD
ERCC3_RAD25_C
T2SSK
Motif
Other DBs
NCBI-GeneID:
124400354
NCBI-ProteinID:
XP_046728086
LinkDB
All DBs
Position
17:15226557..15240919
Genome browser
AA seq
986 aa
AA seq
DB search
MSLFNLERFRFQKEKVVENVASAVGSPKQEQRRLGSKCSSDKENYPERQVKPDGRRGRGK
IPRHALEDVSSDDEACMKARGPTTQSTLNNSKECEKHTNPEMEDKMATLLEMFPQRSRSE
LLEVIENTSTLEGAVAHCLFCFKDKDLSKTKGVAVHSDDAEMQPKKRRKMVEPDSEESES
EEENDEPSKEKEDALVHKLKRKFPEMDKVVLRDVLKEHEWDFENALGSLYMFSSESDSSP
IENEKKISSNSKLSNSSQVSSKDKQKPNSSSLTRWLSAVSSESPSKPRSSSNRSNLRGSK
TASHKPERAKTEKLKPEQNEDFDDSEPDTDAEDVSDEFDMEDEYDCFDPAVQEQIIQFIQ
EASLDELTLIAGCSLKKAQKIISLRPFNTWKDVNEQFFKGNGLSMDLVHGCKKVLRERQV
LKQLMNKCERIARKMTTDVTQVIEKGMGSMKQPTTLNSKLKLQPYQLIGLKWLILLHQHN
LGGILADEMGLGKTIQAISFLAHLYQKGIKGPHLITVPSSTLDNWVRELELWCPSLKVLV
YYGSVEDRKYLRQDILNNQVKFNVIVSTYNLTIGNESDRSLFRKLKLKCAVFDEGHMLKN
MNSLRYRHLMAINTEKRLLLTGTPLQNNLLELISLLNFIMPSMFSSSTSQISKMFSTKSS
EEESSFHKERIAQARLIMKPFILRRVKSEVLKELPPKVEKINMCPMSEAQQKLYHSLFSR
LKNTVNGEKRELSNVMMQLRKMANHPLLHRQYYTTEKLAAMSRAMLKEPTHFDADPALIQ
EDMAVMSDFELHNLCKEYTSISRFQLEKELLLDSGKFFLLTKLLAELKEKGDRAVLFSQF
TMMLDIVEVLLKHLGYQYVRLDGSTPMADRIGLIDKYNTDPEMFIFLLSTRAGGQGINLA
SANVVILHDIDCNPFNDKQAEDRCHRMGQSRTVRVIKLISKDSIEVCMLRVGQEKLKLEQ
DMTTDEGEEGSMSEAVAELLKVSLGL
NT seq
2961 nt
NT seq
+upstream
nt +downstream
nt
atgagtttgttcaaccttgaaaggttccgttttcagaaagagaaggttgttgaaaatgtc
gcatctgcagtcggttcacccaaacaagagcagcgcagactggggagtaagtgcagctcg
gataaggagaattatccggaacgccaagtgaaaccggatggcagacgaggaagaggaaaa
atcccacgccatgcactggaggatgtttcctctgacgatgaggcctgtatgaaggcgagg
ggtcctacaacacagtcaactctaaataatagcaaagagtgtgaaaagcacacaaatcct
gagatggaggataagatggccacgctcctggaaatgttccctcagaggagcagaagtgaa
ttgctagaggtgattgagaataccagcacgctagagggagctgtggcacattgtttgttc
tgcttcaaagataaagatttatccaagacaaaaggtgtcgcagtgcacagcgatgatgct
gagatgcagccaaagaagcggcggaagatggtggaaccagattctgaagagtcagagtct
gaagaggagaacgatgagccaagcaaagaaaaggaagatgctttggttcacaagctaaaa
aggaaatttccagaaatggacaaagtggtattaagagatgttctgaaagagcacgagtgg
gattttgaaaatgccttgggctcattatatatgttttcatcagaatctgactctagccca
atagagaatgaaaaaaagatttcaagtaattcaaagctatcaaacagcagccaagtgagc
agtaaagataagcaaaagccaaattcttctagtcttacaagatggctatcagctgtgtct
agtgaatctccttcaaaaccacggtcctcctccaatagatcaaacttgagaggaagcaaa
acagccagtcataagcctgaaagagcaaaaaccgaaaagttaaaaccggaacaaaatgaa
gacttcgatgactcagaaccggacactgatgccgaggatgtttccgacgaatttgacatg
gaggatgaatatgattgctttgatcctgcagttcaggagcagatcatacagtttatccag
gaggcttcgttggatgaactgactttgatagctggctgctcattgaaaaaagcccagaag
attatttcactgagaccatttaacacatggaaagatgtgaatgagcagttctttaaggga
aatggcttgtctatggatttggtgcatggctgtaagaaagtcctgagggaaaggcaagta
ctgaagcagctcatgaacaagtgtgagcgcatagccaggaagatgactacagatgtaacc
caggtcatagaaaaaggcatgggctccatgaaacagccaaccaccctcaacagcaagtta
aaactacagccatatcagctgataggattgaagtggcttattctcttacaccagcataat
ctcggtgggatcctagctgatgagatgggcttagggaagacaattcaggcaatttctttt
ttggctcatctttatcagaaggggattaaaggccctcacctcatcactgtaccctcttcc
acactggataattgggtaagggagctggagctgtggtgtcccagcctaaaggtccttgtt
tattatggctctgtagaggaccgtaaatacctccgccaggatattctcaacaaccaagtg
aaattcaatgttattgtgtctacatataacctaacaataggcaatgagagtgaccgcagt
cttttccgcaagttgaaattgaagtgtgccgtgtttgatgagggtcacatgttgaagaac
atgaactcgctacgctaccgccatcttatggccattaatactgaaaagagattgttgctt
actggaacacctttacaaaacaacctattggaactcatatctctgctcaactttattatg
ccctccatgttctccagcagtacttcacagatttccaagatgttctccacgaaatcatca
gaagaggaaagttctttccataaagagagaattgcacaagccaggctcatcatgaagccc
ttcatcttgagacgtgtcaagagtgaggtgctgaaagaactaccacccaaggtggagaag
atcaatatgtgtcccatgagtgaggctcagcagaagctctatcattctctcttcagtagg
ctcaagaacaccgttaatggagagaagcgagagctcagtaatgtgatgatgcagctaaga
aaaatggccaatcatcccctgttgcaccggcagtactatacaaccgagaagcttgcagca
atgagccgagctatgctgaaggagccaacacattttgatgcggaccctgcactgatccag
gaagacatggcagtaatgtcagactttgagctccataacctttgtaaagaatacacctcc
atctccaggtttcaactagaaaaagagcttctcctggattctgggaagtttttcctgctt
accaagttattagctgagctcaaagagaagggtgaccgagcagtgctctttagccagttc
accatgatgctggacattgtggaggttctgctgaaacaccttggttatcagtatgttcgg
ttggatggctccacgcctatggcagatagaattggcctcatagataaatacaacacagac
cctgaaatgttcatcttccttctgtcaactcgcgctggtggccaggggatcaacctcgcc
tctgctaatgtagtgattcttcatgatattgactgcaatccttttaatgataaacaagca
gaggatcgatgccatagaatgggacagagcaggactgtgcgggttataaaattgattagt
aaagattccatagaggtctgcatgcttcgtgtagggcaggagaaactcaaactcgagcaa
gacatgactactgatgaaggtgaagagggatcaatgtctgaggctgtagctgagctgtta
aaagtatcactggggctttga
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