Silurus meridionalis (southern catfish): 124400367
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Entry
124400367 CDS
T08004
Symbol
itgb4
Name
(RefSeq) LOW QUALITY PROTEIN: integrin beta-4
KO
K06525
integrin beta 4
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo04382
Cornified envelope formation
smeo04510
Focal adhesion
smeo04512
ECM-receptor interaction
smeo04518
Integrin signaling
smeo04810
Regulation of actin cytoskeleton
smeo04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
124400367 (itgb4)
04518 Integrin signaling
124400367 (itgb4)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
124400367 (itgb4)
09142 Cell motility
04820 Cytoskeleton in muscle cells
124400367 (itgb4)
04810 Regulation of actin cytoskeleton
124400367 (itgb4)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
124400367 (itgb4)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
smeo04147
]
124400367 (itgb4)
04515 Cell adhesion molecules [BR:
smeo04515
]
124400367 (itgb4)
04090 CD molecules [BR:
smeo04090
]
124400367 (itgb4)
Exosome [BR:
smeo04147
]
Exosomal proteins
Exosomal proteins of colorectal cancer cells
124400367 (itgb4)
Exosomal proteins of bladder cancer cells
124400367 (itgb4)
Cell adhesion molecules [BR:
smeo04515
]
Integrins
Integrin beta subunits
124400367 (itgb4)
CD molecules [BR:
smeo04090
]
Proteins
124400367 (itgb4)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Integrin_beta
fn3
Calx-beta
Pur_ac_phosph_N
Integrin_B_tail
FN3_DSCAM-DSCAML_C
EGF_2
EGF_Teneurin
I-EGF_1
EGF_integrin
EGF_TEN
SEA
vWA_SIBA-E
EGF_Tenascin
Ig-CFAP74_4th
I-set
Motif
Other DBs
NCBI-GeneID:
124400367
NCBI-ProteinID:
XP_046728105
LinkDB
All DBs
Position
17:29032141..29058417
Genome browser
AA seq
1956 aa
AA seq
DB search
MVSVPIAVQRVKQPAALRVCRPDLAAYCSDEVFGFDRCDLLENLNSSSCAKIVSVHSSRS
MVQNIGINKNMKHSQVAPQQMRMTLLPGEEHELEIEVFEPARGPLDLYILMDFSNSMSDD
LDNLKRMGDELAQLVGTLSDDYTIGFGKFVDKVTEPQTDMRPSKLKEPWANSDPPFSFKH
VINLTSDISNFRHNLQGERISGNLDAPEGGFDAILQAAVCQSQIGWRKHSTHLLVFSTES
AFHYEADGINVLAGILQRNDEACHLDSNGLYTHATRQDYPSVPTLVRLLVQNNIIPIFAI
TNHSLSYYEKLLHYFPIAELGVLTDDSSNILNIIKNAFDSIRSKISIQAENKPRAIGAQI
LSASGVASDYGNFRIQPGEIGKFKVRLNAKTSVSDKPVCSLNTNDREGMIRVKPTTFSSA
LHIQTSVLCETCECELTPTRKAQRCNGNGDLVCGTCRCYDKWLGPYCNCSSQVSSDSGGC
VAPGTSKPCNERGDCLCGTCLCYNPNQYDGQFCQYDRSQCGRSGGFLCNDRGRCFMGKCV
CDSGWTGNACECPLSNATCLDNKGGLCNGHGXCKCGRCECEYSGLVLGTTCEPNFQAQLG
XCESRRSCVQCQAWNTGELKGDKCKSCPFTIXKVDELKDRDKVIETCEYRDEEDDCTYYY
TVNYPPNPTDKEHEVEVLKKKECPPGGFLWLIPLIMFLMLLLGLLLLCCWKYCACCKACL
ARFCACCPCCAMGRMVGFKEDHYMLRQSLLSSDHLDTPMVRTGPPKSTDVVRWKVKDNVH
RGPNHPQNQTQPNPKEIIDFPLTLRLLRQFSEELSHPEARNTETLKQQVEENLNNVYRQI
PGAQRVQKTRFRTQRNAGKRQNNTIVDTVLSAPRSSFHDILTLTDKQVQAGNFSEMKVVP
GFYTVATDREAMGAVELQXGVESVDVRVPLFIKDEDDDKKQLLVEAVDVPVGIATIGKRH
VNITVIKEHAKSILTFLQPSYTFSRQDGVANIPISRDIIEDGRTQVTYCTRDLTAKDKKD
YLSVDGDLMYQAGETQKMVPVKLLELGEGDSLIDKQPKQFVMDLSNPRQGAKLGKYPRTT
INIADKPDPSVIMFKNSTQTFNISDALYTVPVIRTQGLENPSTVTWRTISSRFNLSGPLK
FAPGEMEKNIVIDTRTQQVPSKPENFQLELYDPSSNSLVRDRKTTQVNIIDPKGDFFITS
GTNPIKASSPTGRILPPANIETVATGPKKIRLNWNPQSGAKGYKVKYWIYGDPEADAQVV
DVKSTHAELTNLYPFCDYEMRVCSYNAQGDGDYSDIVQCQTLEDVPSEPGRLAFNVIGPT
VTQLSWAEPAEPNGVITDYEVVYTPINEDSKPTGPDKKVKIDNPKKRMLLIENLQPSQTY
RYKVRASNKVGWGPYRDATINLATQPHRPMSIPIIPDIPIVDAEAGDDYDSFLMYSNEVL
RSPTASSRPSVSEFSEGKRWKHVKLVGSDLDLRTVSWKLPADVIPTRSTGTLEKDDLLAT
AHSQSPHPTGLCKNPLHGVRFENSVQGGHYQNLLQDQIMNGKWDQGFLFPGGGSGSLSRN
ISTTNTYITSKGDSVPRKHDIHTEDVILRKRSENRNYYDSDGIRDSIVMSDLTGGFSDIL
SGSSFSQTTTTSYSLNSRVHNRSDDINEALQNLDRVLQDTRLQRGVPETPSRLVFSALGP
TALKVSWQEPHCEKPISGYCVLYQLLSGGEMKRMDITNPAQNSVVVQDLLPNQSYLFKVK
AESQEGWGPEREGVITIESAVDPKSPLSPVPGSSFTLSTPSAPGPLVFTALSPETLQLSW
DKPRKPNGEILGYVVTCEQLHGGGDQRSFQLSGNSATSLTVSDLTENVPYKFKVQAQTTQ
GFGPEREGIITIESQDGSMGQYGGQSVMRREVFNLPSQSSTHTTHTMFTEPFTTPEGIMM
SSRQVTQQMSGSVTRQVEMVQRGVTSTVTRKQYYEA
NT seq
5871 nt
NT seq
+upstream
nt +downstream
nt
atggtatcagtgccaatcgctgtgcagcgagtaaagcaaccagctgctctgcgtgtctgc
agaccggatttggctgcatactgctctgatgaggtgtttgggtttgatcgttgtgacctg
ctggagaacctgaactctagcagctgtgctaagatcgtatcagttcacagctccaggtcc
atggtgcagaacattgggattaataagaacatgaaacactcccaagtggctcctcagcag
atgaggatgacattattacctggtgaggagcacgagctggagattgaggtgtttgagccg
gctcgtggtccactcgacctttacatccttatggacttctccaactccatgtctgatgat
ctggataaccttaagaggatgggggatgagctagctcagttagttgggactctctctgat
gattacacaattggattcggaaaatttgttgataaagttactgaaccacagacagacatg
agaccatcaaagttaaaggagccatgggcgaacagtgacccgccgttctcctttaagcat
gtcatcaatcttaccagtgacatcagcaacttcagacataatctgcagggagagagaata
tctggcaatctggatgctcctgaggggggattcgacgccatcctgcaggccgctgtgtgt
cagtctcagatcgggtggaggaagcacagcacccatctcctggtcttctccaccgaatct
gcatttcattatgaagccgacggaataaacgtgttggcaggaattttgcagcggaatgat
gaggcgtgtcacctggacagtaacggtctgtacactcatgccacgcggcaggattatcct
tccgtccccacactggtgcggctcctcgtccagaacaacatcatccccatcttcgccatc
accaaccactcgctttcatactacgagaaactgcttcattatttccccatcgctgaacta
ggagttctgacagatgattcctccaacatcctcaacattattaagaacgccttcgacagt
atccgttcaaaaattagcatccaggctgagaacaaaccaagagccatcggtgctcagatc
ctttcagcatctggagtggcatcggattacggaaacttccgcatccaaccgggagaaatt
ggtaaatttaaagtgcgcctgaacgctaagacgagtgtgagtgacaaacctgtgtgcagc
ctcaacactaacgaccgtgagggcatgatcagggtcaaacccaccacgtttagctctgct
cttcatatccaaacttctgttctctgtgaaacctgcgaatgtgaactgactccgactcgg
aaagcacagaggtgtaacggtaatggagacctggtgtgtggaacctgccgctgttacgat
aaatggttggggccgtactgtaactgctcgtctcaggtgtcctcagactcaggtgggtgt
gttgccccggggacgagcaagccgtgtaacgagagaggagactgtctgtgtgggacgtgt
ctctgctacaacccaaatcagtacgatgggcagttctgtcagtacgacagatcacagtgc
ggcagatcaggaggattcctatgtaacgatcgaggcaggtgttttatgggaaagtgtgtg
tgtgatagtggatggacaggaaacgcatgtgagtgtcctctcagtaatgcaacctgcctg
gacaataaagggggtttgtgtaatggtcatggtnngtgtaaatgtggacgttgtgagtgt
gaatactctggattagtgctgggaacaacatgtgaaccaaatttccaggcacaactgggg
nnatgtgagagcagaaggagttgtgtacagtgtcaagcctggaacaccggagagctaaaa
ggagacaagtgcaagagctgtccatttactatcnaaaaagtggatgaactgaaggacaga
gataaagtgatagagacatgtgagtatcgtgatgaagaagatgattgtacgtattactac
acagtgaactatcctcctaatcctactgataaagaacatgaggtggaagtgctcaagaaa
aaagaatgtcctcctggaggttttctctggttgattcctctcatcatgttcctgatgctg
ttgttgggtctcctgctgctgtgttgctggaaatactgtgcatgctgcaaggcgtgtttg
gccaggttttgtgcctgctgtccgtgttgtgcgatgggtcgaatggtgggatttaaagaa
gatcactacatgctgcgtcagtcgttgctgagctcagatcacctggacacacccatggtc
cggaccgggccgcccaagagcacagacgtggtgcgctggaaagtgaaagataacgtccac
cgtggaccgaaccatcctcagaaccagacccaacccaatcctaaagaaatcattgatttc
cctctgacactgcggctcctcagacagttttctgaagaactttcacacccagaagctcgt
aacactgaaactctcaaacagcaagtggaggaaaatctaaataacgtatacagacaaatt
cctggagctcagcgagtgcagaaaactcgattcaggacgcagagaaatgcagggaagagg
cagaacaacaccatcgtggacacggttctctcggctccacgctccagcttccacgacatc
ctgactctgacagataaacaggtgcaggctggaaatttcagtgagatgaaggtggtacct
ggattctacaccgtcgctacagacagagaggcgatgggggcggtggagctgcagngaggt
gtggagtctgtggatgttcgggttccactctttattaaagatgaggatgatgataagaaa
cagttgctggtggaagccgtcgacgttcctgtaggaatcgcaaccatcggaaaacgtcac
gtcaatatcacagtgattaaagaacacgctaagagcattctgacgttcctccagccctcg
tacacattctcccgtcaggacggcgtcgctaacatcccaattagccgtgacatcatcgaa
gatggtcgcactcaggtcacttactgcacccgtgacctcaccgctaaggacaagaaggac
tacctctcagtggatggagatctgatgtaccaggctggagaaactcagaagatggtccca
gtgaagctgttggagctcggggagggagattccctgatcgataaacagcccaaacagttt
gtgatggatctgagcaacccacgccagggtgctaaactcggcaaatacccacgaaccacc
atcaacatcgccgacaagccagatccaagcgtgatcatgttcaaaaacagcactcagacc
ttcaacatatcggacgcgctctacaccgttcctgtgatccgcactcaaggtctggaaaac
ccttccaccgttacctggcgcacaatttcctcccgcttcaacctgtccggcccactcaag
ttcgctccaggagagatggagaagaacatcgtgattgacactcgcacacagcaggttccc
tccaaaccagaaaacttccagctggagctgtacgacccgagttctaacagcctggtccga
gaccggaagaccacacaggtcaacatcattgatcctaaaggagatttctttataacgtct
ggaactaatcctattaaagcctcatctcctactgggcgaatccttcctccggccaacata
gaaactgttgctacaggccctaaaaagatccgccttaactggaaccctcagtctggagcc
aagggctataaggtgaagtactggatttatggagaccctgaagctgatgctcaggtggtg
gatgttaaaagcactcatgctgaattgacaaatctttacccgttctgcgattacgagatg
cgtgtgtgttcatataacgctcagggagacggagactacagtgacattgtacagtgccag
actcttgaggatgtcccaagtgaaccaggccgtctggcttttaatgtcattggcccgact
gtcactcagctgagctgggcagaaccagcagaacccaatggtgtgatcacagattatgaa
gttgtctacacccccatcaatgaggacagcaaacccactggacctgataagaaggtgaag
atcgacaacccaaagaaacgcatgctgcttattgagaacctacagccttcccagacgtac
cggtacaaagtgcgtgctagcaacaaggtgggatgggggccatacagagacgccaccatc
aatctggcaacccagccacacagacccatgtccattcccattattcctgacattccgatc
gtggatgcagaggccggtgacgattacgacagctttctcatgtacagtaatgaagttctt
cgttcacccaccgccagcagcagacctagcgtgtctgagttctctgaaggcaagcggtgg
aagcacgttaagcttgttggatcagacctggatctccgtactgtctcctggaaactgcct
gctgatgtcatccccacacgaagcacaggcactttggaaaaagatgatcttctggccact
gctcattcccagtcccctcatccaaccggcctttgcaagaaccctctacatggtgtccgt
tttgagaattctgttcaaggtggccattaccagaaccttctacaagaccagatcatgaat
ggaaaatgggatcaagggtttttgttcccaggtggtggaagtggttccctgtcacgtaac
atcagcaccacaaatacttacataaccagcaaaggagattctgtgcctcgcaaacatgac
atccataccgaggacgtgatcttgagaaaacgttcggaaaacaggaattattatgacagt
gatggaatcagagactccattgtgatgagtgacttgactggtggattctctgacattctg
agcggctctagcttcagccagactacaactaccagctacagcctgaactcccgtgttcac
aatcgctcagatgacatcaacgaagctctgcagaacctggacagggttctccaggatact
cggctgcagcgtggtgtcccggaaaccccgagcaggctggtgttttcagctctgggccct
acagcactgaaggtcagctggcaggagccccactgcgaaaagcccatatcaggatactgt
gttctctaccagctcctcagtggaggagaaatgaagcgcatggacatcactaaccctgcg
cagaactctgtggtagttcaggaccttctgcccaaccagtcgtacctgttcaaggtgaag
gctgagagtcaggagggttggggtccggagcgagagggagtcatcaccatcgagtctgca
gtggaccccaagagccctcttagccccgtgccaggttcttcatttactctaagcacaccg
agtgctccaggtcccctggtgttcaccgcactgagccccgagactctgcagctcagctgg
gacaaaccacggaaacccaatggcgagatcctgggctacgtggtcacctgtgaacagctg
catggtggaggagatcagcgctcgttccagctgagtgggaactcggctacgtccctgacc
gtctctgatctgactgaaaatgtcccgtataaatttaaagttcaggctcagaccacacag
ggcttcgggccggagagagagggaatcatcaccatcgagtctcaggatggttctatgggt
cagtacggtggtcagtctgtgatgaggagagaagtgtttaatttaccatcacagagctca
acacatacaacacacaccatgttcacggaacccttcaccaccccagaaggtattatgatg
tcgagcagacaggtcacacagcagatgagtggcagtgttacgcgtcaggtggagatggtg
cagagaggagtgacatccaccgtcaccaggaaacaatattacgaagcctga
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integrated database retrieval system
