Silurus meridionalis (southern catfish): 124400523
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Entry
124400523 CDS
T08004
Symbol
ddx20
Name
(RefSeq) probable ATP-dependent RNA helicase DDX20
KO
K13131
ATP-dependent RNA helicase DDX20 [EC:
5.6.2.7
]
Organism
smeo
Silurus meridionalis (southern catfish)
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
smeo03041
]
124400523 (ddx20)
Enzymes [BR:
smeo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
124400523 (ddx20)
Spliceosome [BR:
smeo03041
]
Other splicing related proteins
Proteins involved in snRNP biogenesis
SMN complex factors
124400523 (ddx20)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_30
AAA_19
Motif
Other DBs
NCBI-GeneID:
124400523
NCBI-ProteinID:
XP_046728379
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Position
17:complement(19880219..19888650)
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AA seq
798 aa
AA seq
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MAACLRKAAHAIDVRTRTDDVLSPGGVDFSSLLLSKPVLEGLAASGFQRPSPIQLKAIPL
GRCGLDLIVQAKSGTGKTCVFSTIALDSLVLENAATQVLVLAPTREIAVQIHAVVMAIGS
SMEGLECHVFIGGRPVSQDKLHLKKCHIAIGSPGRIKQLIEIGLLLTASIRLFVLDEADK
LLEEGSFQEQINWIFSSLPANKQMLALSATYPESLAQHLCRYMREPTFVRLNPTDPGLLG
LKQFYKLVHSHALPHKIFEEKVQNLLELFSKVPFNQALVFSNLHTRAQHLADVLFSKGLP
AVCISGSLSQEQRLEAMSKLKQYQCRVLISTDLTSRGIDAEKVNLVINLDVPHDWETYMH
RIGRAGRFGTLGVAVTYCCHGEEENKMMAIAQKCSLALSPLPDPIPAELMEETCDWNVNV
ESPSKNDLERFLGSRVVKKQPKSEQTVSKSSKEPKHTLPTKEQAEHCSPARTQKSNSDKN
KGKNSIIAPDHLPSAENLDPPAALTRKEMQEALPKIPPLPSFKPTAVKLVSFSEAMADFE
NFMTAGPGLSVEIIRQYGTHDEVSIMDNEQHQNNADHSPGTDGACIKSYGKHEEQILTDE
IAQSQRSVDSSSYPMTSRCMSGSSSSFDSESEMDTEQKMDASASSSLSSAPHLNCRPIHI
TKSSRHTANTTKQLNKLKPRPSKPQIKTHYTNSHTQAPQHCKSRSVSEEKRTEPIAKGKK
GTWRTQRRTQNDEEEDDEEEDNESSQEDGNGYEQDYWRACYQAWEEYYSSSAHYYHSHYN
WLAAYRMNAVYMMEMMKH
NT seq
2397 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgtgtttgaggaaggctgctcatgcaattgatgttagaacgagaaccgatgat
gttctctcgcccggtggagtggacttcagctccttactgctttctaaaccggttctggag
ggtttggcagcttctggctttcagagaccttcaccaatccagctgaaggcgattccactg
gggcggtgtggactggatctgatcgttcaggctaaatctggaacaggaaagacctgtgtg
ttctccaccattgcgctggactcactggtgctggaaaatgctgccacccaggtcctggtt
ttggctccgactagagagattgctgtgcagatccatgcagtggtgatggcgataggcagt
tctatggaggggttggagtgtcatgtttttattggtggccgacctgtaagtcaggacaaa
ctccacctgaagaaatgtcacattgctattggatcaccaggtcggataaagcagctgatc
gagataggacttttgctgacagctagtatccgtctgtttgttctggacgaggcggataaa
ctgctggaggagggcagcttccaggagcagatcaattggatcttctcctctttgccagcg
aataaacagatgctggcactctcagcgacttacccagaatccttagcgcagcatctgtgc
aggtacatgagggagcctacgtttgtgcggctgaaccccactgatcccggacttctcggt
ctgaagcagttctataagcttgtacattctcatgccctgccacataagatctttgaggaa
aaagtgcagaacctgttagagctgttcagtaaagttccctttaatcaggcactggtcttc
tcaaatttgcacacaagggcacaacacttggctgacgtgctcttctccaaaggcttgcct
gcagtttgcatctcaggcagtttgagccaggaacagagactggaggcaatgtccaagcta
aagcagtaccaatgtcgagttcttatttccactgatctgacatcgcgtggtatagatgca
gagaaagtgaatttggtgattaatctggatgtgcctcacgattgggagacgtacatgcac
aggattggccgtgccggacgctttggaactctgggggttgctgtaacgtactgttgtcat
ggagaagaagaaaacaaaatgatggcaattgcccagaagtgcagtctggctcttagtcca
ttaccagatccaatcccagccgagctaatggaagagacgtgtgactggaatgtgaatgta
gagtcgccttcaaaaaatgatcttgagcgcttccttggatccagagtagtaaagaaacag
cccaaatctgagcagacagtttccaaatcctctaaagagcctaaacacacactccctact
aaagagcaggctgagcattgcagtcctgctagaactcaaaaatccaatagtgacaaaaac
aaaggcaaaaattctatcattgcccctgaccacctacccagtgctgaaaatctagatcct
cctgcagcactaacaaggaaggaaatgcaggaggcacttccaaaaattcctcccctgccc
tcttttaaacctacagcagtgaaacttgtgtccttctctgaggccatggctgactttgag
aactttatgacagctggtcctggactatcagtcgagatcatccgacagtatggaactcat
gatgaagtaagcataatggacaatgaacagcatcagaacaatgctgaccatagtcctggg
actgatggtgcttgtattaaatcctatggtaaacatgaggagcaaatattaactgatgaa
attgctcaatctcagcggtcagtggattcaagctcttatccaatgacttctaggtgcatg
tctggcagctcttcctcttttgacagtgagtctgagatggatacagagcagaaaatggat
gcttcagcatctagctctctgtcgagtgccccacacctgaattgtagaccgatacacatc
acaaaatcatctagacacacagccaatacaacaaagcagctcaacaaactcaaaccaagg
ccttcaaaacctcaaatcaagactcattataccaacagtcacactcaggctcctcagcac
tgcaagtcaagatcagtgtctgaagaaaagaggactgaaccaattgccaagggtaagaaa
gggacctggaggacacagaggaggacacagaacgatgaggaggaagacgatgaggaagag
gacaatgaatcctctcaagaagatgggaatggatatgaacaggactattggagagcatgt
tatcaagcctgggaagaatattacagcagttctgctcattactaccactcgcattataac
tggctggctgcatatcgcatgaacgctgtatacatgatggagatgatgaaacactga
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