Silurus meridionalis (southern catfish): 124400783
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Entry
124400783 CDS
T08004
Symbol
trim24
Name
(RefSeq) transcription intermediary factor 1-alpha isoform X1
KO
K08881
tripartite motif-containing protein 24 [EC:
2.3.2.27
]
Organism
smeo
Silurus meridionalis (southern catfish)
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
smeo01001
]
124400783 (trim24)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
smeo04121
]
124400783 (trim24)
Enzymes [BR:
smeo01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
124400783 (trim24)
Protein kinases [BR:
smeo01001
]
Serine/threonine kinases: Other
TIF1 family [OT]
124400783 (trim24)
Ubiquitin system [BR:
smeo04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
124400783 (trim24)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bromodomain
zf-B_box
ANCHR-like_BBOX
PHD
zf-RING_UBOX
PHD-1st_NSD
zf-C3HC4_2
zf-RING_5
zf-C3HC4
PML_CC
Tubulin-binding
ARM_ARMC5
Motif
Other DBs
NCBI-GeneID:
124400783
NCBI-ProteinID:
XP_046728494
LinkDB
All DBs
Position
18:complement(11717585..11731160)
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AA seq
1001 aa
AA seq
DB search
MEENGETLEADDLVIIVENEAESKPIQEAKQKEEGSLGLLDICPLCKLSFHSREPKLLPC
LHSFCKRCLPSSSRNLGYTEQGTNQHMPSEGQGKTSVNVIRCPVCHQECMEVEVLDNFFA
KDTMEVPSSTVEKTSQLCMSCDDNTEATGFCVECVEFLCVTCIEAHQRVKFTRDHTIRQM
EEMSSEAMGASTQKPVFCDVHKQEPLKLFCETCDRLTCRDCQLLKHKDHNYQFLEDAYRN
HREHLEKMTVQLQDKRKAIGEVSDTINNGLQQVDENRKTVTNEIKKAICNLIMEINRKGK
ILINQLEALTKDHEMVLKKQQEDISSITKHLDHVINFTKWATASNSGTALLYCKRLILYQ
IQFLLRAKCNTSYVPQSSVRFQCRAAFWASNVDLGSLVVEKSSARQQGGPQPFPFHQMNP
VPRGEGPPLSLTGSQAQQHRQSTLAQLQMQVEKLAQQPNRHVSPNHWSWGMRPPGQPPST
RPMQGGSPSQNLAGMPQQAWRYGSPHINTRSPPTLIQNSSIPQQVKTLRGLINSPNFPPK
PMDVLQGPSRYSQNAPLQNTAPHASQVSYMQRNMMEPSYLSRRSDPSVSLSVSGPRASFV
PTLPPTMHEKNAPVRQISPMSAPSSSEARTGAGPWKRSEPPASGPTSLTTKRRRKSSPGP
VIVIKDEPEDDDEVRFVQTTNKASLPDSTGVQSQTQQQGSSPTEEQQTEKSPEPEEDPNE
DWCAVCQNGGELLCCDKCPKVFHLSCHIPTLNASPSGEWYCAFCRDLNEPEMEYDTDRSA
ESKNVKPDPDSVALTPVDRRKCERLLLRIYCNELSTDFQEPVTPSSMPEYNEIIKTPMDL
SKVRSKLEGKENISYSTEDFVADIRLIFKNCATFHKEDTEMSSVGANLESYFEEQLKLLY
PDRTFTDVKAEEPAPEPEPAPAAPSPKDTAEAATQSPKTLMPEPPAANEDAEIPNKSPPK
EEPQTEEPAENTEGTEKPQENCSAENTPEEDHDKDQNGSSA
NT seq
3006 nt
NT seq
+upstream
nt +downstream
nt
atggaggagaacggagaaacgctggaagccgacgatctcgtgatcatcgtggaaaacgag
gccgagagcaaaccaatccaagaggccaaacagaaagaggaaggcagcctgggcctgctg
gacatctgtcccctgtgtaagctaagcttccacagcagggaacccaaactgctgccctgt
ctgcactccttctgcaaaagatgccttccgtcatcatcgaggaacctgggatacaccgaa
caaggcacgaaccagcacatgccgtctgagggacaaggcaagacatcagtaaacgtgatc
cggtgcccagtttgtcatcaagagtgcatggaagttgaggtcttggataacttctttgcc
aaggacaccatggaggtgcctagcagcactgtagagaagaccagtcagctgtgtatgagc
tgcgacgacaacacggaagccactgggttctgtgtggagtgtgtggaattcctgtgcgtc
acctgcatcgaggctcatcagcgtgtaaagttcacgagagatcatacgatcaggcaaatg
gaggagatgtcttcagaagcaatgggtgcttccacgcaaaaaccggttttctgtgatgtc
cacaagcaagagcccctgaagcttttctgtgaaacttgtgaccgtctcacctgcagggac
tgtcagttactcaagcacaaggaccataactaccagtttctggaggatgcatatagaaac
cacagggaacacctagagaagatgacggtccagcttcaggacaaacggaaggccattggg
gaggtgtctgacactataaataatggccttcagcaagtggatgaaaaccgcaagactgtc
accaatgagattaaaaaggcaatctgcaatctgattatggaaataaacagaaaagggaag
atcttaatcaaccagcttgaggcactgacgaaagaccatgaaatggtgctgaagaaacag
caggaagacatctcctccatcaccaagcatcttgatcatgtgattaacttcacaaagtgg
gctacagccagtaacagtggtaccgcgctcctgtactgtaaacggctgattttgtatcaa
atccagttccttcttcgagcaaagtgcaatacttcctacgttcctcagagctcagttcgc
ttccagtgccgggctgctttttgggcttcaaatgttgaccttgggtccctcgtggtagag
aaaagctcagctcggcagcagggtggcccccagccatttcctttccatcagatgaacccg
gtccccaggggtgaggggccccctttgtccctcacaggatctcaggctcagcagcacagg
cagagcacactggcccagctgcaaatgcaggtggagaaacttgctcaacagccaaaccga
cacgtgtctcctaatcactggtcttggggaatgcgtccccctgggcagccaccatccact
agaccaatgcagggaggatcaccttcccagaatttagccggtatgccccagcaggcttgg
aggtatggcagcccgcacattaatacaagaagtccaccgactctgatccagaactccagc
attccacaacaggtaaagaccttaaggggtcttatcaacagtcctaacttccctcccaaa
cctatggacgtgcttcaaggaccttctcgctattcccagaatgcacctctccaaaacact
gctccgcacgcatctcaggtgtcttacatgcagagaaacatgatggaaccctcatacctc
agcaggagaagtgacccttctgtttctttatcagtgtctggcccgagagctagttttgtt
ccaactctgccccctactatgcatgagaaaaatgcaccagtaagacagatttctcccatg
tctgcaccttcatcatcagaagcaaggaccggggctggtccctggaagcgttcggagcct
ccagcgagtgggccaacaagccttacaaccaagagaaggagaaagtcctctccagggcca
gtcatagtcatcaaggatgaacctgaagatgacgacgaagttcgatttgtccagaccact
aacaaagctagtcttccagatagcacaggcgtgcagtctcagacccagcaacaggggtcg
tctcccacagaagagcagcagacagagaaaagccctgaacctgaggaggaccctaatgag
gactggtgcgctgtgtgccagaatggaggagaactgctctgctgtgataaatgtcccaaa
gtcttccatctcagctgtcatattcccactctcaatgcatcgccaagtggcgaatggtac
tgcgcattctgccgtgatcttaacgaacccgaaatggagtacgacaccgatcgtagtgca
gagtctaagaacgtgaagcccgatcctgattcggttgctttaactcctgtggatagacga
aaatgtgagagactgttactgcgcatctactgtaatgaactcagcaccgatttccaggag
cctgtaacaccgtcctcaatgccagaatacaacgagattattaaaaccccaatggacctg
tctaaagtgaggagcaaactggagggcaaggagaatatcagttacagcacagaggacttt
gtggcagacataaggcttattttcaaaaactgtgctactttccacaaggaggacacggag
atgtccagtgttggagctaatctggagagttattttgaagagcagctgaaacttttatat
ccagatcggacctttacagatgtaaaagcagaagagccagctccagaaccagaacccgca
ccagctgctccatctccgaaagatacagcagaagcagcaacgcagtcaccaaaaacactc
atgcctgaaccacctgcagcaaatgaggatgccgaaattcctaataaaagtcctcctaag
gaggaacctcagacagaagaacctgcggaaaatactgagggcacggagaaaccacaggaa
aactgtagtgctgagaacacacctgaggaagaccatgataaagatcagaatgggtcatca
gcctaa
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