Silurus meridionalis (southern catfish): 124401053
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Entry
124401053 CDS
T08004
Symbol
sox5
Name
(RefSeq) transcription factor SOX-5 isoform X1
KO
K09269
transcription factor SOX5/6/13 (SOX group D)
Organism
smeo
Silurus meridionalis (southern catfish)
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
smeo03000
]
124401053 (sox5)
Transcription factors [BR:
smeo03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
124401053 (sox5)
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
CENP-K
Motif
Other DBs
NCBI-GeneID:
124401053
NCBI-ProteinID:
XP_046728936
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Position
18:5355554..5591859
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AA seq
785 aa
AA seq
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MKCRCLATALGSSVCLGAACARVSVCVCERSSTRPLVSSVSMAASLMSSKRPASPYGGTD
GEVVMATSRQRLDDDEVDGHAVIHLPLSSYCSSPRAPESPPTLHSSMEQESSKGLALSPY
PQHNSSTSPSKQQQQQDEGSGSATALGTPERRKGSLADVVDTLKQRKMEELIKSEPEEAP
SIERLLSKDWKDKLLAMGSGHFGEIKGTPDSLAEKERQLMGMISQLSSLREQLLAAHEEQ
KKLAASQIEKQRQQMELAKQQQDQIARQQQQLLQQQHKINLLQQQIQQVQGQLPPLMIPV
FPPDQRTLAAAAAQQGFLLPPGFNYKPGCNDPYPLQLIPTTMAAAAAATPGLGPLQLQQL
YAAQLAAMQVSPGSKHSAVPQTNLAGTHSPTRGHSEKSRSSPTPKVKDEGAQPLNLSSKP
KTSESKSPTSPASPQVPAMKLGPGSLKHSAPSSIGGPPARVSSIDLLSSITSGGYLNDHE
AVSKAFQEARQMKEQLKREQQVLDAKVAAVNSLTLNNGRLEKEKAALESLSQQMKQSEEN
KFTHAMMDFGMSGDSDGSPSVSDSRIFREARGRGNGEPHIKRPMNAFMVWAKDERRKILQ
AFPDMHNSNISKILGSRWKAMTNLEKQPYYEEQARLSKQHLEKYPDYKYKPRPKRTCLVD
GKKLRIGEYKAIMRSRRQEMRQYFTVGQQAQMPLSSGGVVYPGALSMAGMPSPQMPSEHS
SMSSSPEPAPPTGPPSYLSISKGDEPRIKEEVLRMDESNGDAYDDFDYEDDDGDFGSDSE
NHVVQ
NT seq
2358 nt
NT seq
+upstream
nt +downstream
nt
atgaagtgtcggtgtttagcgacagcgctgggctcctcagtgtgtttaggagcagcgtgt
gcgcgtgtcagtgtgtgtgtgtgtgagcgctcgtccactcgtccgctcgtctcttctgtc
tcgatggctgcgtctctgatgtcttccaagcgaccagcctctccatatgggggaacagat
ggagaggtagtcatggcgacgagcagacagcgattggacgatgacgaggttgatggacac
gctgtcattcacctgcccctcagctcgtattgcagctcaccgcgtgccccagaaagcccc
cccacactacacagcagcatggagcaggagagcagcaaaggcctggcattgagcccgtac
ccccagcacaactcttctacctcacccagtaaacagcagcagcagcaggacgagggctcg
ggttcggccacggctctgggaacgcccgagaggcgcaagggcagccttgccgatgtggtg
gacactctgaagcagcgcaagatggaggagctgatcaagagcgagcctgaggaggcccca
agcattgagaggcttctgtccaaggattggaaggacaagctgctggcgatgggctccggt
cacttcggagagatcaaaggtaccccggacagcctggcggagaaggagaggcagctgatg
gggatgatcagccagctgagcagcctgagggagcagctgttagccgcccacgaggagcag
aagaagctggccgcctcgcagatcgagaaacagagacagcagatggagctggccaagcag
cagcaagaccagatcgctcgacaacagcagcagctcctgcagcaacagcacaaaatcaac
ctcctgcagcaacagatccagcaggtccagggtcagctgccacctctgatgattcctgtt
ttccctccagatcagaggactctggcagcagccgcagcccagcaaggattccttctgccc
ccaggcttcaactacaaacccggctgcaatgacccatacccccttcaactcatcccaaca
accatggcagctgctgcagctgccacaccaggccttggacctcttcagcttcagcagctg
tatgcagctcagttggcagccatgcaggtatctccagggtccaagcacagcgccgtgccc
cagaccaacctggcagggacgcattctccaactagaggccatagcgagaagagcaggagc
agcccaacacccaaggttaaggacgagggcgctcagcccctgaatctgtcatccaagcct
aagacatccgagagcaagtcacccacctcccccgcttccccacaggtccctgccatgaag
ctgggtcccggatccttgaagcacagcgccccctcaagcatcggaggacctccggcccga
gtcagctccatagacctgctgtcgtctatcacctctggaggttacctgaatgaccacgaa
gccgtgagcaaggccttccaggaggcgcggcagatgaaggagcagctgaagagagagcag
caggttctcgatgccaaagtggcagcagtgaacagcctcaccctcaacaacggacgctta
gagaaggagaaagccgcactcgaaagcctgagtcagcagatgaagcagtctgaggagaac
aagttcacccacgccatgatggacttcgggatgagcggcgactcggacggaagccccagc
gtgtcagattcgaggattttccgcgaggctcggggtcgaggtaacggtgaaccgcacatc
aagaggcccatgaacgccttcatggtttgggcgaaagacgagaggaggaaaatcctgcag
gcttttcccgacatgcacaactccaacatcagcaaaatcctcggttctcgctggaaggcc
atgactaatctggagaagcagccgtactacgaggagcaggcgcgtctcagtaagcagcac
ctggagaaataccccgactacaagtacaagccccggcccaaacgcacctgcctggtggac
ggcaagaagctgcgcatcggcgagtacaaggccatcatgcgcagccgcagacaggagatg
cgacagtacttcactgtggggcagcaggcccagatgccgctctcctcagggggcgtggtc
tacccgggcgctctctccatggcgggaatgccgtccccccagatgccgtccgagcactcg
agcatgtccagcagtccggaaccggctccgcccaccggcccgccctcgtacctcagtatc
agcaagggggacgagcctcgcatcaaggaggaggttttgcggatggacgagagcaacggc
gacgcctacgacgacttcgattacgaggacgacgacggagactttggcagcgacagcgaa
aaccacgtcgtgcagtaa
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