Silurus meridionalis (southern catfish): 124401061
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Entry
124401061 CDS
T08004
Symbol
pus7l
Name
(RefSeq) LOW QUALITY PROTEIN: pseudouridylate synthase 7 homolog-like protein
KO
K06176
tRNA pseudouridine13 synthase [EC:
5.4.99.27
]
Organism
smeo
Silurus meridionalis (southern catfish)
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
smeo03016
]
124401061 (pus7l)
Enzymes [BR:
smeo01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.27 tRNA pseudouridine13 synthase
124401061 (pus7l)
Transfer RNA biogenesis [BR:
smeo03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
124401061 (pus7l)
Prokaryotic type
124401061 (pus7l)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruD
R3H_PUS7L
PUS7L_N
Motif
Other DBs
NCBI-GeneID:
124401061
NCBI-ProteinID:
XP_046728970
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All DBs
Position
18:complement(16257221..16267399)
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AA seq
667 aa
AA seq
DB search
MSGGSASLHFRSLHEGFHGSIKNLTQDFVVTEIDLHGQLVNSPDAPEEPINRINDDIKDV
PPKDSIRAKLLTEETHSNEITIDAVCLNEGEVLGQERCDLSVILSSSPNKSLEHFASTIR
GCSEVQKNLEMSLGVFPDKHQRAVVHSAVKYTYPFLMTATNHEEILVREDPDFRELSNLV
SVEEAEDFFRFKDAKEPGSTYTFSPDDIKEHRTSVHHFLSRKFGKLLETKSFMEHGRTAI
TVRLRERGRRARKRTAADQDEQEIYTGFTLRKDNLETLEAISYMAAVLGVLPSDFSYAGI
KDKRAITYQSMVVKKISPERLLAKADMFERKGLQLSKIHPVSEPIRLGRLAGNRFELVIR
DLEPHAGSFRDLESLVKEAVENVKFILQTLGFVNYYGPQRFGSSQKVQADHVGLALLKED
TNAALRLFLSPEEXNDHENKAKQHFYQTGNAKESLALMPLHKARERMMLRALHRYGTGPE
GGVQAWLSLPHSMRVFYLHAYCSRLWNEAACFRLQTLGPRPVQGDLVVVDACRESQKEET
HASQVHVVTSAEEFESVFSLDQVVLPMPGNSVKYPENTVGSWYRERLEQDGLSSCRFRIS
SLKLNVPGCYRPLLSYPRNVSYSLHTNEDTQDTEQKPEHRTHLAMTFNLNASCYATVCLQ
EIMKCDP
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
atgtcaggaggatcagcatcactgcactttaggtctcttcatgaaggctttcatggcagc
attaagaacctgacacaggactttgtagtcactgagatagatttacacgggcaactggtg
aacagtccagatgctcctgaagaacctataaataggattaatgatgatatcaaagatgtt
ccacccaaagacagtatcagagcaaagctcctgactgaggaaacacattccaatgaaatc
acaattgatgctgtctgcttaaatgaaggtgaagttttgggccaggagcgttgtgacctg
agtgtaattctgagctcctctccaaataagtccttagaacactttgctagcaccatccga
ggatgtagtgaggtgcagaagaacctggaaatgtcccttggagtctttccagacaaacac
cagcgagccgtcgtgcacagtgcagtgaagtacacctacccctttctcatgacggccacc
aaccacgaggagatcctggtcagagaagacccagacttcagagaactttcaaatttagta
tctgtggaggaagcagaggatttctttagatttaaagatgcgaaagaacctggctccacg
tacaccttttcacctgatgacatcaaggagcaccggacctctgttcaccattttttgagc
agaaagtttggaaagcttttggagacaaagagcttcatggaacatggcagaactgcaatt
acagtgaggctaagagagcgaggcagaagggccaggaagaggacggcagcagatcaggat
gagcaggagatatacaccggtttcaccctaagaaaagacaatcttgagactttggaggcc
atcagctacatggcagcagtgcttggagttcttccctctgacttctcctatgctggcatc
aaagacaaacgagccataacctaccagtcaatggtggtaaagaagatttctccagaacgg
ttgttggcgaaggccgatatgtttgagaggaaaggattacagctgtctaaaatccatcca
gtatctgagcccattcggcttggaaggctagcaggcaaccgttttgagctcgtcatccga
gacctggagcctcacgcgggcagttttagagatctagaaagccttgtgaaagaggcagta
gagaatgtaaagttcatcctgcagactctgggctttgtgaattattatggacctcagagg
tttggaagtagccagaaagttcaagcggaccatgtgggacttgcgcttctgaaggaggac
acgaatgcagctctaaggttgtttctgagccctgaggagngaaatgaccacgaaaataaa
gccaagcaacatttctatcagacagggaatgccaaagaaagcctggctctgatgcctctc
cataaggccagagagaggatgatgttgcgggctcttcaccgatatggcactggccctgag
ggtggcgttcaggcttggctcagccttccacacagcatgagggtcttttacctccatgcc
tactgcagtcgtttgtggaatgaagcagcatgttttcgactgcagactctgggacccaga
cctgtacagggagacctggttgtagtcgatgcctgcagagaaagccagaaagaagaaacc
catgcatcacaggtccatgttgtgacctctgcagaagagtttgagagtgtgttttcacta
gatcaggttgtcctaccaatgccaggcaacagtgtgaagtacccggagaacacagtcggc
tcatggtatcgggaaagactggaacaggacggtctcagctcatgtagattcagaatttcc
tcactcaagctcaacgtcccgggttgctatcgccctctactgtcttaccctcgtaatgtc
tcctatagcctacacactaatgaagacacacaggacactgagcagaaacctgaacacaga
actcacctggcaatgacttttaacttgaatgcgtcctgctacgcaaccgtctgcctccaa
gaaatcatgaagtgtgacccctag
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