Silurus meridionalis (southern catfish): 124401084
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Entry
124401084 CDS
T08004
Symbol
cntn1b
Name
(RefSeq) contactin 1b
KO
K06759
contactin 1
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
124401084 (cntn1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
smeo04515
]
124401084 (cntn1b)
00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:
smeo00537
]
124401084 (cntn1b)
Cell adhesion molecules [BR:
smeo04515
]
Immunoglobulin superfamily
Contactins
124401084 (cntn1b)
Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:
smeo00537
]
Others
124401084 (cntn1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ig_3
I-set
ig
Ig_2
fn3
V-set
Ig_DSCAM-DSCAML_C
Sp38
Fn3-III_PB4
Motif
Other DBs
NCBI-GeneID:
124401084
NCBI-ProteinID:
XP_046729018
LinkDB
All DBs
Position
18:complement(19790450..19804649)
Genome browser
AA seq
1029 aa
AA seq
DB search
MMQVLIVLLSFFSLLFSADAIKPRFFEPRIFDKEATGFGPIFEEEPLDTVYAEDSPENKI
SMNCRVRANPAATVKWWHNNWEIKLLEQPDEHYSLVGGNLVITNPDKSKHAGKYVCVAKN
VYGTVISKEATVRFGFLNQFPTDERESVYVKEGQGAVLLCDSPTRYPNEVMYRWIYNDFP
NFIIPDQRRFVSQTTGNLYIAKAELSDIGNYSCFVSSPTIGKSVFSSSIALVPEVEKEVK
RYPADIRVRFPKTYALVGQNITLECFALGNPLPHIRWRKLDADLPPNYEVSMNGALLHLI
NVQYEDEGSYECEALNVKGMDWYRQWLYVEGAPEWAEHINDTEKDVGSELTLSCTAVGKP
LPWIRWLKDGYSYGKGELKFSSLTFEDSGMYQCIAENNWGTIYANAELRVVSCAPTFIYN
PVKKILLGAENGRVVIECKPRAAPKPRFIWKRGSETFSNSSRVFVWDDGSLEILNVTKAD
DGFYTCFAENDRGKANSTGRLSIKEATKITVAPADMEVTVGESTLLQCSASYDPSFDITF
IWSMDSYIINFATDYEHYEQLTDHESSGHLLIKNIQVGHEGHYVCTAQTIVDNATASANV
YVRGRPGPPGGVRVEEIRDTSVKLVWSLGSDHGSPITQHVIQTRDSFALDPEDWKTAVTS
PEFLDEKANAATVIKLYPWMEYEFRVYAVNDLGAGDCSVPSIRIKTWDSIPTTAPTDLSG
YVGLNGELIVTWTPMKPQYFFGKKFGYIVGFKPHEDYEWTWSTVADPEARRYVYKDGIIP
DTEIEVKVKGYNNKGEGPYSLTTVVFSASSAPTEAPLDVYARQVTSTEALVWWLPVFQVP
PHWVDGYQIRYWRKYDDNEAAASRVLVHSSVNQTRLENMRPDSHYLIEVRAYNGAGLGPP
SEHCEMFTRRPPPSRHLRVYKYVSFTRKWLYIYWDHIYNYWNESYVEGYKILFRKEGERY
GKLYTTGRHYIDFPMPETGDYVIEIRARCEGGDGPISQIQVQGTAIPIAQPLSAGALLLL
VLAFMNLDL
NT seq
3090 nt
NT seq
+upstream
nt +downstream
nt
atgatgcaggttctgattgtgttgctgagttttttctctctgcttttctccgcagatgcc
atcaagccgaggttctttgagcccagaatctttgacaaggaggccacaggttttggaccc
atatttgaggaggagccattagacactgtatatgctgaggattctcctgagaacaaaatc
tccatgaactgcagagtgcgagcgaatccagcggccactgtcaaatggtggcacaataac
tgggagattaagctgctggaacagccggatgaacactacagtttagtgggaggaaacctg
gtaatcaccaatccagacaagagtaaacatgcaggaaaatacgtatgtgtggccaagaac
gtttatggcacagtcatcagcaaggaggccactgtgaggtttggatttctgaaccagttt
cctactgatgagagagagagtgtgtatgttaaagaaggtcagggggctgtgctcctgtgt
gactcaccaactcgctacccaaatgaggtgatgtaccgatggatctacaatgattttccc
aactttattattcctgatcagaggcgcttcgtgtctcagaccacaggaaacctctacatt
gctaaagcagagctctctgacatcgggaactactcctgcttcgtgtccagccctaccata
ggcaagagtgtcttcagctcctcgatcgctctggtgccagaggtggaaaaggaagttaaa
cgatatcctgcagacattcgagtccgatttcccaagacatatgccctcgtagggcaaaac
atcacactggagtgcttcgctctgggaaaccctcttccacacattcgctggaggaaactg
gatgcagatctgccacccaactatgaggtgagcatgaacggtgctcttctccaccttatc
aatgtgcagtacgaggatgagggcagctacgaatgtgaggctctgaatgtaaagggcatg
gactggtaccgccagtggctttatgtggagggtgctccagagtgggcagagcacatcaac
gacacagagaaggatgttggcagtgagctgaccctctcctgcacggctgtgggaaagcct
ttaccatggatccgctggctgaaggacggatactcgtatggaaaaggggagctgaagttc
tccagtctgacttttgaagactcgggcatgtatcagtgcatcgctgagaacaactgggga
accatctacgctaatgcagagctacgtgtggtctcctgtgcacccacattcatctacaac
ccagtcaaaaagattttactgggagctgagaatgggcgagtggtgatcgagtgtaaacca
cgagctgctccaaaaccgaggtttatttggaaacgtggctctgaaaccttctctaactcg
tcacgtgtgtttgtttgggacgatgggagtctggaaattctgaacgtgacgaaggcagat
gatggattttacacgtgttttgctgagaacgatcgaggaaaagccaacagcacagggaga
cttagcattaaagaggcaactaagatcactgtagctccagcagacatggaggtgactgtg
ggtgagagtacactcctgcagtgctcagcttcatatgatcccagctttgatatcaccttc
atctggtcaatggactcgtacatcatcaactttgccactgactatgagcactacgagcag
ctgacagatcatgagtccagtggacacctgctgattaaaaacattcaggttggacacgaa
ggacactacgtctgcacggcacagaccatcgtggacaacgccactgcttctgctaacgtc
tacgtcagaggaaggcctggtcctccaggaggggtgcgtgtggaggagattagagacaca
tcagtgaagctggtttggagtcttggctcagatcatggtagtccaatcacccagcatgtt
attcaaaccagagactccttcgctctagaccctgaggactggaaaactgcagttacgtct
cccgagttcttggatgagaaagccaacgcggccacggtcattaaactgtatccttggatg
gagtatgaattccgggtttacgccgtcaatgacctgggagcaggagactgcagtgttccc
tccatcaggattaaaacctgggattccattcccaccacggctcccactgatttaagtggt
tatgtcggcttgaacggagagctcatagtgacttggacacccatgaagccccagtacttt
tttggcaaaaagttcggttatatagtggggtttaagcctcatgaggactacgagtggaca
tggtcaactgtggctgacccagaggcgagacgctacgtctacaaggatggtattatacct
gacactgagatagaagtcaaagtgaaaggttacaacaataaaggagaaggaccatacagt
ctgaccacagtggtgttttcagcttccagtgctcccacagaggcaccgctggatgtttat
gctcgccaggtgacctccaccgaggctctagtgtggtggcttcctgtttttcaggttcct
cctcactgggtggacggctaccagattcgctactggaggaaatatgatgacaacgaggct
gcagcctctcgtgttctggtccacagctcagttaatcagactcgtttggagaacatgcga
cccgactcacactaccttattgaggtgcgcgcttacaacggagctggacttggaccaccc
agtgagcactgtgagatgtttaccaggagaccaccgcccagtcgtcatctcagagtctac
aaatatgttagttttacacgcaaatggctctatatctactgggaccacatttacaactac
tggaatgagtcctatgtggagggatacaagattttgtttaggaaggaaggagagcggtac
gggaagctctacaccactggcaggcactacatcgacttccccatgcctgagacaggagat
tatgtaatcgagatccgggctcggtgtgaaggaggagatggaccaatatcacaaatacaa
gtgcaagggacggccatcccgatcgctcagcctctcagtgctggagctctgctgctgctc
gtgttggccttcatgaacctggacctttag
DBGET
integrated database retrieval system
