Silurus meridionalis (southern catfish): 124401174
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Entry
124401174 CDS
T08004
Symbol
sh3rf1
Name
(RefSeq) E3 ubiquitin-protein ligase SH3RF1
KO
K12171
E3 ubiquitin-protein ligase SH3RF [EC:
2.3.2.27
]
Organism
smeo
Silurus meridionalis (southern catfish)
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
smeo01009
]
124401174 (sh3rf1)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
smeo04121
]
124401174 (sh3rf1)
Enzymes [BR:
smeo01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
124401174 (sh3rf1)
Protein phosphatases and associated proteins [BR:
smeo01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
124401174 (sh3rf1)
Ubiquitin system [BR:
smeo04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
124401174 (sh3rf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SH3_9
SH3_1
SH3_2
zf-RING_UBOX
zf-C3HC4
zf-C3HC4_2
zf-RING_2
zf-RING_5
zf-C3HC4_4
zf-RING_4
zf-RING_11
Prok-RING_4
zf-Nse
Motif
Other DBs
NCBI-GeneID:
124401174
NCBI-ProteinID:
XP_046729178
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All DBs
Position
18:complement(22941127..22987155)
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AA seq
870 aa
AA seq
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MDESALLDLLECPVCLERLDASAKVLPCQHTFCRRCLLGIVGSRGELRCPECRTLVESGV
DELPSNILLVRLLDGIKQRPWRAGTGCTNGSAGGGVREHANSGAQPQRAQTKSTAVRGVP
QLPCAKALYNYDGKEPGDLKFGKGDIIILRRQVDENWYHGEMGGVHGFFPASFVQVIKPL
LQPPPQCKALYDFELKDKEADKDCLPFSKDDILTVIRRVDQNWAEGMLGDKIGIFPISYV
EFNSAARQLIELDKVPDDSAEGSTSSSSFSSSTPGPQANGSHKAPGEKKNSKKRHSFTSL
TMSHKPCLAPPPQRHSMEISGPVLISSSNPTAAARIGELSGGLSSSAPSQVHICTTGLIV
TPPPSSPVTTTTVFTFPPEISYASIPVEALPPPPPPPPQSSSVGAASSLATGQRPSPTAS
DQSGRQRPTVYVAMFPYTPRKEDELELRKGEMFLVLERCQDGWFKGTSMHTGKIGVFPGN
YMSPVNRTVASNNQPKVPLTMCSQAGRSVTIVSSSSPPNGAALCNVDPNKSVPICTGPAP
SSPVPAGVVTAAHMPPGQHPKVLMHVTSQMTVNQARNAVRTAVGHNQDRPTAAITPIQSQ
NAMAFLPHLAVCPQPSPGSASNSNPGSSRMGVAMGCAAASLTPPNISAASLEVDSMRPST
MVAIPVASGNPKPPGTSAANQGPACKLDKDCKREKKGLLKLLSNKKKSRPSPPSSPTLEA
EQTVAVDVPQGAMAPEMPVTNTTAGAIGNHCRNGACPVEAETPAPSSSSSSSTNSDAARR
SGCQENSAPIAPPPRQPCSSLLSMQHDGRPIVCERYRVVVSYPPQSEAELELKEGDIVFV
HKKREDGWFKGTLQRNGRTGLFPGSFVDSI
NT seq
2613 nt
NT seq
+upstream
nt +downstream
nt
atggacgaatcggccctgctggatcttctcgagtgcccggtgtgcttagaacgcttggac
gcctcagccaaggtactcccgtgccaacatacgttctgccgccgctgcctgctcggtatc
gtgggatcgcgtggggagctgcgatgcccggaatgtcgcacgctcgtggagagtggcgtg
gacgagttgccgagcaacatcctcctcgtacgcctgctcgacggcattaagcaacgaccc
tggagagccggcacgggttgcaccaatggctcagctggcggaggggtccgagagcatgcc
aactctggagcgcagccccaaagagctcagaccaaaagcactgctgtcaggggtgtcccc
cagctcccttgcgccaaggccttgtacaactacgatggtaaggaacccggcgacctcaag
ttcggcaagggcgacatcatcatcctgcgccggcaggtggatgagaactggtaccacggc
gaaatgggcggagtgcacggcttcttcccggccagcttcgtgcaggtgatcaagccgcta
ctgcagccgccgccgcagtgcaaggccctgtacgactttgagctgaaggacaaggaggct
gacaaggactgccttcctttctcaaaggacgacattctgacggtaattcgacgcgtggac
cagaactgggccgagggaatgctgggagataagattggcatcttccccatatcctatgtc
gagtttaactcggctgcacgccagttaatcgagctcgacaaggtgccggacgactctgcc
gagggttctacttcgtcctcctccttttcgtcgtccaccccgggcccccaagccaacggg
tcgcataaagcgccaggggagaaaaagaacagcaagaagcgccactcgttcacctcgctg
accatgtcccataagccatgcctggcccctccgccgcagcgccactccatggagatcagc
gggcccgtgctgatcagctcctcgaaccctacagcggcagcacgcatcggagagctcagc
ggcggcttgtcgtctagcgccccctcccaggttcatatttgcacaacgggcctcatcgtt
actccaccaccgagcagtcctgtaacaacgaccacggtcttcacttttcctccagagatc
agctatgcctccattccagtggaagcattgcctcctccaccacctcctcccccacaatct
tcctccgtgggcgcggcgtcatcgttggccacagggcagaggccgtcccccactgcgagc
gaccagagtggacgtcagagaccaactgtgtacgtcgcaatgttcccgtacacacctcgt
aaggaggatgagctagagctgagaaagggcgagatgttccttgtgctggagcgctgccag
gacggctggtttaaaggaacctccatgcacaccggcaagatcggagtgtttcctggcaac
tacatgagtcctgtcaacagaacggtggcaagcaacaatcaacccaaagtgccgttaaca
atgtgctcgcaggctggacgcagtgtcaccattgttagctcctcgtcccctccgaacgga
gctgccctgtgtaacgttgaccccaacaagtctgtccctatttgcacaggccctgcccct
tcaagccccgttcctgcaggtgttgtgacagcagctcacatgccgcctggtcagcatccc
aaagtgctcatgcatgtgacgtcacaaatgacggttaaccaggcacgtaacgctgtgagg
accgctgtgggtcacaatcaggaccggcccactgcagccataacgcccatccagtcccag
aacgccatggcttttctgcctcacctggctgtgtgtccacagccgtcacctggcagcgcc
tccaactcgaaccctgggtcaagcagaatgggagtggcaatgggctgtgccgccgcctca
cttaccccacctaatatcagcgctgcatctttggaggttgatagcatgagaccaagcacc
atggtggcgatcccagttgcttccgggaaccccaagcctcctggtacctcggcagccaat
cagggtcctgcttgtaaactagacaaggactgcaagagggagaagaaaggcctgttgaag
ctgttgtcaaataaaaagaagtctcgcccctctcccccatcctccccgactctggaggcg
gagcaaaccgttgccgtggacgtgccgcaaggagccatggcacccgaaatgcccgtaacc
aacacaacagcaggagctataggaaatcattgccggaacggagcctgtcctgtggaggct
gagacacctgcaccttcatcttcatcatcatcatcaacaaattctgatgctgcacgcagg
agcggctgtcaggaaaattccgcccccattgcaccaccaccacgacagccgtgctcctcg
ctcctgtccatgcagcatgacggacggccaattgtgtgtgagaggtaccgtgtggtagtc
tcttaccctccgcagagcgaggctgaactggagctgaaggagggcgacattgtcttcgtg
cacaagaaacgcgaggatggctggtttaaaggcacgctccagaggaacggccggacgggc
ctctttcctggtagtttcgtcgacagcatttga
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