KEGG   Silurus meridionalis (southern catfish): 124401196
Entry
124401196         CDS       T08004                                 
Symbol
lrp6
Name
(RefSeq) low-density lipoprotein receptor-related protein 6
  KO
K03068  low density lipoprotein receptor-related protein 5/6
Organism
smeo  Silurus meridionalis (southern catfish)
Pathway
smeo04150  mTOR signaling pathway
smeo04310  Wnt signaling pathway
Brite
KEGG Orthology (KO) [BR:smeo00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   04310 Wnt signaling pathway
    124401196 (lrp6)
   04150 mTOR signaling pathway
    124401196 (lrp6)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:smeo04131]
    124401196 (lrp6)
Membrane trafficking [BR:smeo04131]
 Endocytosis
  Clathrin-mediated endocytosis
   Low-density lipoprotein receptor (LDLR) family proteins
    124401196 (lrp6)
SSDB
Motif
Pfam: Ldl_recept_b FXa_inhibition Ldl_recept_a Vgb_lyase SGL DUF5050 EGF_LRP2 EGF cEGF
Other DBs
NCBI-GeneID: 124401196
NCBI-ProteinID: XP_046729229
LinkDB
Position
18:18915447..18952131
AA seq 1629 aa
MSSREKRRKNMGALLPSLFLCTFCLQIRAVPLLLYANRRDLRLVDAAKGPSANATVVISG
LEDAAAVDFVFSRSLIYWSDVSEEAIKRATFNGSSSSSQTTVVSGLASPDGLACDWLGSK
LYWTDSETNRIEVAELNGSLRKVLFWQDLDQPRAIALDPGRGYMYWTDWGEIPKIERAGM
DGTNRAVIIETEIYWPNGLTLDYSQQKLYWADAKYNFIHRSNLDGTGRETVVKGALPHPF
ALTLYEETLFWTDWNTHSIHSCQKQTGEERHEIHLNIFSPMDIHVFSQKRQLTEVRSPCS
VKNGGCSHLCLLSPVKPFYQCACPTGVQLLEGNKTCRDGATKLLLLARRTDLRRISLDTP
DFTDIVLHAEDIRHAIAIDYDPVDGHVYWTDDEVHAIRRSRLDGSDAQLLVTSQVNHPDG
IAVDWIARNLYWTDTGTDRIEVTRLNGTMRKILISEELDEPRAIVLDPVSGYMYWTDWGE
IPKIERATLDGTERVVMVNTSLGWPNGLALDYAERKIYWGDAKTDKIEMMNMDGTGRRIL
VEDKLPHIFGFTLLGDYVYWTDWQRRSIERVHKRTADREVIIDQLPDLMGLKATYVHQAL
GTNPCAENNGGCSHLCLYKPQGVACACPIGLELMGDMSTCIVPEAFLLFSRHTDIRRISL
ETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDITLKTISRAFMNGSALEHVVEFGLDYP
EGMAVDWLGKNLYWADTGTNRIEVAKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEW
GGRPKIDRAAMDGTGRITLVPNVGRANGLTIDYAERRLYWTDLDTTLIESSNMLGLEREV
IADDLPHPFGLTQYQDYIYWTDWSLRSIERANKTSGQNRTLIQGHLDYVMDILVFHSSRQ
GGWNACASTNGHCSHLCLAVPVSSYVCGCPAHYSLNDDNKTCSAPTSFLLFSQKSAINRM
VMDEQQSPDIILPIHSLRNVRAIDYDPLDKQLYWIDSKQNFIRRAQEDGNQSMTVVSNSL
GGHNLGLQPFDLSIEIYSRFIYWTSEVTNVINVTRLDGSRVGVVLRGEHDKPRAIVVNPE
RGYMYFTNLQDRSPKIERAALDGTEREVLFFSGLSKPVALAIDNELGKLFWADMDLRRIE
SSDLSGANRIVIEDSNILQPVGLTVFGNHLYWIDRQQQMIERIDKTTREGRTKIQARITA
LTDIHAVHELHMDEYNKHPCTLDNGGCSHICIVKGDGTTRCSCPVHLVLLVDELSCGEPP
TCSPEQFSCTSGEVDCIPQAWRCDGYVECKDESDEQDCPVCSDNEFQCDSKQCVDILLRC
NGEINCQDRSDENKCDVHCPPDQFMCNNGQCIGKHKKCDHNTDCTDNSDEIGCYPTEEPS
PQPTNTIGSIVGVVMTLFVVGAVYFVCQRVLCPQMKDDGETMTNDFVVHGPSSVPLGYVP
HPSSLSGSLPGMSRGKSVIGSLSIMGGSSGPPYDRAHVTGASSSSSSSTKGTYFPPILNP
PPSPATVRSQYTMEFGYSSNSPSTHRSYSYRPYSYRHFAPPTTPCSTDVCDSDYTPGRRA
QPVSSCIIAKGYTSDANYDSEPFPPPPTPRSQYLSAEENCESCPPSPYTERSYSQHLYPP
PPSPCTDSS
NT seq 4890 nt   +upstreamnt  +downstreamnt
atgagctccagggagaagcggaggaaaaacatgggcgcgctgctgccgagtctctttttg
tgcactttttgtttgcaaatacgcgccgtgcctctcctcctgtacgccaacagacgcgac
ttgcgattggtggacgccgccaaaggtcccagcgccaacgccacggtggtgataagcggc
ttggaggatgctgcagccgtggactttgttttcagcagaagtctgatttactggagcgat
gtgagcgaggaggccattaagcgggccacctttaacggctcgagctccagctcccagacc
acggtggtgtcgggtctggcttcgcccgacggtctggcatgtgactggttgggtagtaaa
ctttactggacagactcggaaacaaaccgcatcgaggtagccgagctcaacggttcactc
aggaaagttttgttctggcaggacctggaccagccgagagcgatcgctctggatccgggc
agagggtacatgtactggacagactggggagagatccctaagattgagagggcaggtatg
gatggcacaaatcgagccgtgatcatcgaaactgagatctactggccaaatgggctcacg
ttggactacagccaacagaagctttactgggctgatgccaaatacaactttattcatcgc
tcgaatctggatggcacagggagagagaccgtagtgaagggtgctctaccacaccccttc
gccctaacgttgtatgaagagacacttttctggacagactggaacacacactctatacac
tcatgtcagaagcagacaggggaggagcgccatgagatccacttgaacatcttttcgcct
atggacattcacgttttcagccaaaagagacagctcaccgaagtgaggagtccttgttct
gtgaaaaatggtggctgttcgcacctgtgcctgctttcgccggtcaagccgttctaccag
tgcgcctgtcccaccggtgtgcagctgctggaaggcaacaagacctgccgagatggagcc
acgaagctgcttctccttgcacggcgcacagacctccggcgcatctctctcgacacgccg
gacttcaccgacatcgttttacacgcggaggatatccgacatgccatcgccatcgactat
gaccccgtagacggccacgtgtattggacagatgatgaagtgcatgcaattcgccgctct
cggttggatggcagtgatgcacagctgctcgtcacctcgcaagtgaatcacccagatggc
attgctgttgactggattgcacgcaacctttactggaccgacacaggcactgaccgcatt
gaagtgacacggcttaacggtaccatgaggaagatcctgatttccgaggaactggacgag
cctagagcgatcgtcctggatcctgtctcaggatacatgtactggaccgactggggtgag
atcccgaagatcgagcgtgctactctggatggaaccgagcgagttgtgatggtgaacaca
tccctgggctggcccaatggcctagcgctcgactatgcagagaggaagatttactgggga
gatgctaagactgacaaaatagagatgatgaatatggatggaactggtcgcaggattttg
gtcgaggacaaacttccgcacatattcggcttcaccctcctgggcgactacgtttactgg
acagactggcaaaggcgcagcatcgagcgtgtgcacaaacgcaccgccgatcgcgaagtg
atcatcgaccagctgcctgacctcatggggctgaaggctacctacgttcaccaggcttta
gggacgaacccgtgtgcggagaacaacggtggttgcagtcacctgtgcctgtacaagcca
cagggtgtggcgtgcgcatgtcccatcggcctggagctcatgggcgacatgagcacgtgc
atcgtcccggaagcctttttgctcttctcacgtcacactgacattcgccgcatttccctc
gaaaccaacaacaataacgttgccattccgctcactggtgtcaaggaggcatcagcgctc
gactttgacgtgaccgacaaccgcatctactggaccgacatcacgctaaagactatcagc
cgagcattcatgaatggcagtgccctggagcacgtggttgagtttggtcttgattaccca
gaaggcatggctgtggactggctgggcaagaacctgtactgggcagatactggcactaat
cgcattgaggtggcaaagctggacggccagcacaggcaggtcctggtgtggaaagacctg
gacagtccacgagctcttgcactggaccctgctgaagggttcatgtactggactgagtgg
ggtgggagacccaagattgatcgcgcagccatggatgggactggacggatcactttagta
cccaatgtgggtcgtgccaatgggctcaccattgactacgctgagaggcgcctctactgg
accgacctggacaccacgcttattgaatcttccaacatgctcggtctcgagcgtgaggtg
atcgcagatgacctgccccaccctttcggtctcacgcaataccaagactacatttactgg
acagactggagcctgcgcagcatcgagcgtgctaacaaaaccagtgggcagaaccgcaca
ctcatccagggacatctggattacgtcatggacatcctggtgtttcattcgtcacgtcaa
ggaggctggaacgcctgcgcctcaaccaacgggcactgctcacacctgtgcctggccgtg
cctgtcagcagttatgtgtgtggctgcccagcacattactcacttaatgatgacaacaaa
acctgcagcgcacccacgtctttcctactgtttagccagaagtcagctattaatcgcatg
gtaatggacgagcagcagagccctgacatcatcctacccattcacagcctacgcaacgtt
cgagccatcgactacgacccactcgacaagcagctgtactggatcgactcgaagcagaac
ttcattcgtcgtgcgcaggaggacggcaatcagagtatgaccgtggtgtccaactcattg
gggggccacaatctgggcttgcaaccatttgacctgagcatcgaaatctacagccgcttc
atctactggaccagcgaggtgaccaacgtaattaacgtaacacgccttgacggctcgcgt
gttggagtggtgctccgtggagagcatgacaagccccgtgccattgtggttaaccccgag
agagggtacatgtactttaccaacctgcaggatcgctctcctaagatcgagcgagcagct
ctggacggcactgagcgagaggttctgttctttagcggcctgagcaaacctgtcgccctc
gctatcgacaacgagctgggcaaactcttctgggccgacatggacctgcgtcgcatcgaa
agcagcgatctatctggcgccaatcggattgtgatcgaggactcaaacatactgcagcca
gtgggtttgactgtgttcggtaatcacctctactggatcgatcggcagcagcagatgatc
gagcgcatcgacaagacaacgcgcgagggccggacgaaaatccaagctcgcattacggcg
cttacagacatccacgctgtccacgagcttcacatggatgagtacaataaacacccttgt
accctagacaatggaggatgctcccacatctgtatagtaaagggagatggtacgacccgc
tgctcctgccctgttcacctggttctcctggtggatgagctttcctgtggagagccgccc
acatgttccccggagcagttctcatgcacatcgggagaggtggactgcatcccgcaggcc
tggcgctgcgacggatatgttgagtgcaaagatgaaagcgatgagcaagactgccccgtg
tgttcagacaacgagtttcagtgcgacagcaagcagtgcgtggacatcttactgcgctgc
aacggcgagatcaactgccaggatcgctcagacgagaacaagtgcgatgttcattgccct
cccgatcagttcatgtgtaacaacggtcagtgcattggcaagcacaagaagtgcgaccat
aacacggactgcacggataactccgatgagattggctgctaccccacagaagaaccttct
ccccaaccaaccaacaccatcggctccatcgtcggcgtggtgatgacgctgtttgttgtg
ggcgcagtgtactttgtgtgccagcgcgtcttgtgcccgcagatgaaggacgacggcgag
accatgaccaacgactttgtcgtgcacgggccatcctctgtaccgttgggctacgtgcca
cacccgagctctctgtccggctctcttccaggcatgtctcgtgggaagtctgtgattggc
tcattgagcattatgggagggagcagcggaccaccgtacgatcgggcgcacgtgactggg
gcatcctccagcagctcgtctagcactaagggcacttatttccctcctatcctgaaccct
cctccttctccagctacagtgcgctctcagtacaccatggagtttggctactcgtctaac
agtccttccacacaccgctcatacagctacagaccgtacagctaccggcacttcgctcct
ccgaccacgccgtgcagcacagacgtctgcgacagcgactacacgccaggccggcgagcg
cagcccgtctcctcctgcatcattgccaagggctacacgagtgacgccaactatgactcg
gagccgttccctccccctcccacgccgcgtagccagtacctgtccgccgaggagaactgc
gaaagctgcccgccctcgccgtacacagaacgcagctactctcagcacctttaccctcca
ccgccctcgccctgcactgactcatcctga

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