Silurus meridionalis (southern catfish): 124401196
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Entry
124401196 CDS
T08004
Symbol
lrp6
Name
(RefSeq) low-density lipoprotein receptor-related protein 6
KO
K03068
low density lipoprotein receptor-related protein 5/6
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo04150
mTOR signaling pathway
smeo04310
Wnt signaling pathway
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09130 Environmental Information Processing
09132 Signal transduction
04310 Wnt signaling pathway
124401196 (lrp6)
04150 mTOR signaling pathway
124401196 (lrp6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
smeo04131
]
124401196 (lrp6)
Membrane trafficking [BR:
smeo04131
]
Endocytosis
Clathrin-mediated endocytosis
Low-density lipoprotein receptor (LDLR) family proteins
124401196 (lrp6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ldl_recept_b
FXa_inhibition
Ldl_recept_a
Vgb_lyase
SGL
DUF5050
EGF_LRP2
EGF
cEGF
Motif
Other DBs
NCBI-GeneID:
124401196
NCBI-ProteinID:
XP_046729229
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All DBs
Position
18:18915447..18952131
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AA seq
1629 aa
AA seq
DB search
MSSREKRRKNMGALLPSLFLCTFCLQIRAVPLLLYANRRDLRLVDAAKGPSANATVVISG
LEDAAAVDFVFSRSLIYWSDVSEEAIKRATFNGSSSSSQTTVVSGLASPDGLACDWLGSK
LYWTDSETNRIEVAELNGSLRKVLFWQDLDQPRAIALDPGRGYMYWTDWGEIPKIERAGM
DGTNRAVIIETEIYWPNGLTLDYSQQKLYWADAKYNFIHRSNLDGTGRETVVKGALPHPF
ALTLYEETLFWTDWNTHSIHSCQKQTGEERHEIHLNIFSPMDIHVFSQKRQLTEVRSPCS
VKNGGCSHLCLLSPVKPFYQCACPTGVQLLEGNKTCRDGATKLLLLARRTDLRRISLDTP
DFTDIVLHAEDIRHAIAIDYDPVDGHVYWTDDEVHAIRRSRLDGSDAQLLVTSQVNHPDG
IAVDWIARNLYWTDTGTDRIEVTRLNGTMRKILISEELDEPRAIVLDPVSGYMYWTDWGE
IPKIERATLDGTERVVMVNTSLGWPNGLALDYAERKIYWGDAKTDKIEMMNMDGTGRRIL
VEDKLPHIFGFTLLGDYVYWTDWQRRSIERVHKRTADREVIIDQLPDLMGLKATYVHQAL
GTNPCAENNGGCSHLCLYKPQGVACACPIGLELMGDMSTCIVPEAFLLFSRHTDIRRISL
ETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDITLKTISRAFMNGSALEHVVEFGLDYP
EGMAVDWLGKNLYWADTGTNRIEVAKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEW
GGRPKIDRAAMDGTGRITLVPNVGRANGLTIDYAERRLYWTDLDTTLIESSNMLGLEREV
IADDLPHPFGLTQYQDYIYWTDWSLRSIERANKTSGQNRTLIQGHLDYVMDILVFHSSRQ
GGWNACASTNGHCSHLCLAVPVSSYVCGCPAHYSLNDDNKTCSAPTSFLLFSQKSAINRM
VMDEQQSPDIILPIHSLRNVRAIDYDPLDKQLYWIDSKQNFIRRAQEDGNQSMTVVSNSL
GGHNLGLQPFDLSIEIYSRFIYWTSEVTNVINVTRLDGSRVGVVLRGEHDKPRAIVVNPE
RGYMYFTNLQDRSPKIERAALDGTEREVLFFSGLSKPVALAIDNELGKLFWADMDLRRIE
SSDLSGANRIVIEDSNILQPVGLTVFGNHLYWIDRQQQMIERIDKTTREGRTKIQARITA
LTDIHAVHELHMDEYNKHPCTLDNGGCSHICIVKGDGTTRCSCPVHLVLLVDELSCGEPP
TCSPEQFSCTSGEVDCIPQAWRCDGYVECKDESDEQDCPVCSDNEFQCDSKQCVDILLRC
NGEINCQDRSDENKCDVHCPPDQFMCNNGQCIGKHKKCDHNTDCTDNSDEIGCYPTEEPS
PQPTNTIGSIVGVVMTLFVVGAVYFVCQRVLCPQMKDDGETMTNDFVVHGPSSVPLGYVP
HPSSLSGSLPGMSRGKSVIGSLSIMGGSSGPPYDRAHVTGASSSSSSSTKGTYFPPILNP
PPSPATVRSQYTMEFGYSSNSPSTHRSYSYRPYSYRHFAPPTTPCSTDVCDSDYTPGRRA
QPVSSCIIAKGYTSDANYDSEPFPPPPTPRSQYLSAEENCESCPPSPYTERSYSQHLYPP
PPSPCTDSS
NT seq
4890 nt
NT seq
+upstream
nt +downstream
nt
atgagctccagggagaagcggaggaaaaacatgggcgcgctgctgccgagtctctttttg
tgcactttttgtttgcaaatacgcgccgtgcctctcctcctgtacgccaacagacgcgac
ttgcgattggtggacgccgccaaaggtcccagcgccaacgccacggtggtgataagcggc
ttggaggatgctgcagccgtggactttgttttcagcagaagtctgatttactggagcgat
gtgagcgaggaggccattaagcgggccacctttaacggctcgagctccagctcccagacc
acggtggtgtcgggtctggcttcgcccgacggtctggcatgtgactggttgggtagtaaa
ctttactggacagactcggaaacaaaccgcatcgaggtagccgagctcaacggttcactc
aggaaagttttgttctggcaggacctggaccagccgagagcgatcgctctggatccgggc
agagggtacatgtactggacagactggggagagatccctaagattgagagggcaggtatg
gatggcacaaatcgagccgtgatcatcgaaactgagatctactggccaaatgggctcacg
ttggactacagccaacagaagctttactgggctgatgccaaatacaactttattcatcgc
tcgaatctggatggcacagggagagagaccgtagtgaagggtgctctaccacaccccttc
gccctaacgttgtatgaagagacacttttctggacagactggaacacacactctatacac
tcatgtcagaagcagacaggggaggagcgccatgagatccacttgaacatcttttcgcct
atggacattcacgttttcagccaaaagagacagctcaccgaagtgaggagtccttgttct
gtgaaaaatggtggctgttcgcacctgtgcctgctttcgccggtcaagccgttctaccag
tgcgcctgtcccaccggtgtgcagctgctggaaggcaacaagacctgccgagatggagcc
acgaagctgcttctccttgcacggcgcacagacctccggcgcatctctctcgacacgccg
gacttcaccgacatcgttttacacgcggaggatatccgacatgccatcgccatcgactat
gaccccgtagacggccacgtgtattggacagatgatgaagtgcatgcaattcgccgctct
cggttggatggcagtgatgcacagctgctcgtcacctcgcaagtgaatcacccagatggc
attgctgttgactggattgcacgcaacctttactggaccgacacaggcactgaccgcatt
gaagtgacacggcttaacggtaccatgaggaagatcctgatttccgaggaactggacgag
cctagagcgatcgtcctggatcctgtctcaggatacatgtactggaccgactggggtgag
atcccgaagatcgagcgtgctactctggatggaaccgagcgagttgtgatggtgaacaca
tccctgggctggcccaatggcctagcgctcgactatgcagagaggaagatttactgggga
gatgctaagactgacaaaatagagatgatgaatatggatggaactggtcgcaggattttg
gtcgaggacaaacttccgcacatattcggcttcaccctcctgggcgactacgtttactgg
acagactggcaaaggcgcagcatcgagcgtgtgcacaaacgcaccgccgatcgcgaagtg
atcatcgaccagctgcctgacctcatggggctgaaggctacctacgttcaccaggcttta
gggacgaacccgtgtgcggagaacaacggtggttgcagtcacctgtgcctgtacaagcca
cagggtgtggcgtgcgcatgtcccatcggcctggagctcatgggcgacatgagcacgtgc
atcgtcccggaagcctttttgctcttctcacgtcacactgacattcgccgcatttccctc
gaaaccaacaacaataacgttgccattccgctcactggtgtcaaggaggcatcagcgctc
gactttgacgtgaccgacaaccgcatctactggaccgacatcacgctaaagactatcagc
cgagcattcatgaatggcagtgccctggagcacgtggttgagtttggtcttgattaccca
gaaggcatggctgtggactggctgggcaagaacctgtactgggcagatactggcactaat
cgcattgaggtggcaaagctggacggccagcacaggcaggtcctggtgtggaaagacctg
gacagtccacgagctcttgcactggaccctgctgaagggttcatgtactggactgagtgg
ggtgggagacccaagattgatcgcgcagccatggatgggactggacggatcactttagta
cccaatgtgggtcgtgccaatgggctcaccattgactacgctgagaggcgcctctactgg
accgacctggacaccacgcttattgaatcttccaacatgctcggtctcgagcgtgaggtg
atcgcagatgacctgccccaccctttcggtctcacgcaataccaagactacatttactgg
acagactggagcctgcgcagcatcgagcgtgctaacaaaaccagtgggcagaaccgcaca
ctcatccagggacatctggattacgtcatggacatcctggtgtttcattcgtcacgtcaa
ggaggctggaacgcctgcgcctcaaccaacgggcactgctcacacctgtgcctggccgtg
cctgtcagcagttatgtgtgtggctgcccagcacattactcacttaatgatgacaacaaa
acctgcagcgcacccacgtctttcctactgtttagccagaagtcagctattaatcgcatg
gtaatggacgagcagcagagccctgacatcatcctacccattcacagcctacgcaacgtt
cgagccatcgactacgacccactcgacaagcagctgtactggatcgactcgaagcagaac
ttcattcgtcgtgcgcaggaggacggcaatcagagtatgaccgtggtgtccaactcattg
gggggccacaatctgggcttgcaaccatttgacctgagcatcgaaatctacagccgcttc
atctactggaccagcgaggtgaccaacgtaattaacgtaacacgccttgacggctcgcgt
gttggagtggtgctccgtggagagcatgacaagccccgtgccattgtggttaaccccgag
agagggtacatgtactttaccaacctgcaggatcgctctcctaagatcgagcgagcagct
ctggacggcactgagcgagaggttctgttctttagcggcctgagcaaacctgtcgccctc
gctatcgacaacgagctgggcaaactcttctgggccgacatggacctgcgtcgcatcgaa
agcagcgatctatctggcgccaatcggattgtgatcgaggactcaaacatactgcagcca
gtgggtttgactgtgttcggtaatcacctctactggatcgatcggcagcagcagatgatc
gagcgcatcgacaagacaacgcgcgagggccggacgaaaatccaagctcgcattacggcg
cttacagacatccacgctgtccacgagcttcacatggatgagtacaataaacacccttgt
accctagacaatggaggatgctcccacatctgtatagtaaagggagatggtacgacccgc
tgctcctgccctgttcacctggttctcctggtggatgagctttcctgtggagagccgccc
acatgttccccggagcagttctcatgcacatcgggagaggtggactgcatcccgcaggcc
tggcgctgcgacggatatgttgagtgcaaagatgaaagcgatgagcaagactgccccgtg
tgttcagacaacgagtttcagtgcgacagcaagcagtgcgtggacatcttactgcgctgc
aacggcgagatcaactgccaggatcgctcagacgagaacaagtgcgatgttcattgccct
cccgatcagttcatgtgtaacaacggtcagtgcattggcaagcacaagaagtgcgaccat
aacacggactgcacggataactccgatgagattggctgctaccccacagaagaaccttct
ccccaaccaaccaacaccatcggctccatcgtcggcgtggtgatgacgctgtttgttgtg
ggcgcagtgtactttgtgtgccagcgcgtcttgtgcccgcagatgaaggacgacggcgag
accatgaccaacgactttgtcgtgcacgggccatcctctgtaccgttgggctacgtgcca
cacccgagctctctgtccggctctcttccaggcatgtctcgtgggaagtctgtgattggc
tcattgagcattatgggagggagcagcggaccaccgtacgatcgggcgcacgtgactggg
gcatcctccagcagctcgtctagcactaagggcacttatttccctcctatcctgaaccct
cctccttctccagctacagtgcgctctcagtacaccatggagtttggctactcgtctaac
agtccttccacacaccgctcatacagctacagaccgtacagctaccggcacttcgctcct
ccgaccacgccgtgcagcacagacgtctgcgacagcgactacacgccaggccggcgagcg
cagcccgtctcctcctgcatcattgccaagggctacacgagtgacgccaactatgactcg
gagccgttccctccccctcccacgccgcgtagccagtacctgtccgccgaggagaactgc
gaaagctgcccgccctcgccgtacacagaacgcagctactctcagcacctttaccctcca
ccgccctcgccctgcactgactcatcctga
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