Silurus meridionalis (southern catfish): 124401239
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Entry
124401239 CDS
T08004
Symbol
lamb1b
Name
(RefSeq) laminin subunit beta-1b
KO
K05636
laminin, beta 1
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo04510
Focal adhesion
smeo04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
124401239 (lamb1b)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
124401239 (lamb1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF_laminin
Laminin_N
LAMININ_IV_B
EGF_LMN_ATRN
LAMB1
F5_F8_type_C
Glu_dehyd_C
DAPDH_C
Motif
Other DBs
NCBI-GeneID:
124401239
NCBI-ProteinID:
XP_046729324
LinkDB
All DBs
Position
18:15019120..15068677
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AA seq
1774 aa
AA seq
DB search
MRILHWAMILALGLAVQAQLLPEANNMCSEGSCYPATGDLLIGRAHRLTASSTCGLYSPE
HFCIFSSLAAEKCFECDSRDLYNEVTHPNSHTIDNVVTTFTPNRLVTWWQSENGVENVTI
QLDLEAEFHFTHIIMTFKTFRPAAMVIERSSDFGQTWKVYRYFASNCSASFPHISQGPVK
SVDEVICDSRYSSIEPSTEGEVIYRALDPIFKIPDPYSQGIQNFLRITNLRMRMVKLHML
GDNLLDGGDEVKNKYYYALYDMVVRGNCFCYGHSSECAPGDDSEDGPEGMVHGKCVCNHH
TSGLNCERCQDFYQDVPWRPAEGRNTNECKKCECNQHSNACHFNMAMYVASGNRSGGVCD
DCQHNTQGQHCEGCKPFYYQHPNRDIRDPHICERCDCDIWGSLNGGVCDSATDVMRGLIA
GQCRCKENVEGERCDHCKRGYYGLSQDMLGCLPCSCNPLGTLPGGNPCDTDTGICYCKRL
VTGRNCDRCQPQHWGLSTDKDGCRPCDCDLGGALNNDCSPHTGQCVCREHMSGRRCNTLN
PGYYFTALDHYTYEAEEAAFGPAVTVVTRPIPRPADRHPTWTGVGFAKVPERETLQFTID
NIPQSMDYDLLIRYEPQLPEVWEQVRVDVTQPAYPLTPAKCLGSFSDHQTISLPPGSRYM
VLSRPLCLEKGEKYTVKLNLSHFSSNDFHHQPHILIDSIVLLPVVRDLEMFSGSADGEAA
WEMFQKYRCLENSKSVQKLPMNDICRGYIFSASALLQQGAMECECDLLGSNSTMCDPNGG
QCLCRKNVIGRKCNSCAPSTFQLEPSGCRPCECDPLGSKNPFCNSTTGQCLCLPGVYGRQ
CAHCLPRHWGFPHCQQCFCNGHGEHCHPQTGQCLECRDHTTGDQCERCKTGYHGNALIGS
TDRCRPCMCPDGPDSGRQFADTCYQNPTSLQLVCVCSQGYKGPRCEDCAPGYYGNPQVSG
GRCHPCQCNGNINMHDPLSCDARTGICLRCLHNTEGQACQHCRRGYYGDASTQNCQRCMC
QPLGTDSSRCVDGECQCNQVSGQCPCLPNVEGLHCDHCAPNTWNFNSEEGCQSCQCHPTH
SYSQSCDVVSGQCVCMPGFGGRTCDECRPLFWGDPEVRCHACDCDPKGTATPQCNKTSGA
CVCVEGVGGPRCDSCGRGYVGTFPDCQPCHQCFREWDVTVGELTNQTQQLVDTVEQLKVT
GVTAAYQETIDSLEGGAKQITQILEDDKAQKTLRHSQELLQQAKSIMTDLEPSLNHSEVD
VKQTAEEHRRVAKELITLSVDIQKQQESFNNTQQQVLRIKHSDAVGAVDSIREYYQETVE
AESQVNRTTTGSHSHLEQSASRRKATEVRLKAEEGEFDQKQRLDTQILNTLNQDLERDEL
SQLSEKVCGGKWSPNGCGECGGLGCVTEDGKHQCGGQDCKGVLTQTNNAWKKAKDLDKDI
MDSLKEVEKLQRMVSTAQGRAEESKSSAQEIQEKANKNKAKVEQTNQELRELIQQIRDFL
TSGTDLERIEALSDEVLKMKMPVFVGELKNVTSEIRQHVASLTSVDDVLAQSSEQAQTAE
RLLQQARSISEEATQLREKVDKVKAALNESEHAQSVANDSLNATKSDLVYIKQQIKTVES
KTVASEFMLSNTTHRLLDLEKNVVAVEQKTRESFDSAQSAENKADYVSDDTDQTKRKLDL
EVQPKFQSVRGLMEEKAFGVSDARQRAERLQEEAKNLAADVVTKLSNLNELERMFSVNQK
TLAERAAEIEELEKEAQAVLQELSQTVTVYSTCL
NT seq
5325 nt
NT seq
+upstream
nt +downstream
nt
atgcggattttacactgggccatgattctggcgttaggtttggctgtccaggcacagctt
cttcctgaagccaacaatatgtgttcagagggaagctgttaccctgccacaggcgacctg
ttgatcggcagagctcatcgccttacagcctcgtcaacctgtggactttactctcctgaa
cacttctgcatcttcagcagcctagcggctgagaagtgttttgagtgtgactctcgggac
ctctacaatgaagtcacccatcccaacagccacaccatcgacaacgtggtcacaaccttt
actcctaaccgtctcgtaacttggtggcagtcagagaacggagtggagaatgtgactatt
caactggacttagaagcagaattccactttacccatatcatcatgacctttaagacattt
cgtcctgcagcgatggtgattgagcgttcatcagattttggacagacctggaaggtgtac
cgttactttgcatctaactgctcagcttcctttccacacatctcccaaggaccggtcaag
agtgttgatgaggtcatctgtgattcacggtactctagcatcgagccttcaacagaggga
gaggtgatttaccgagcacttgaccctatatttaagattcctgatccctacagtcaagga
atccaaaacttcctgagaataactaacctgcgaatgcggatggtgaagctacacatgctc
ggcgataaccttctggacggaggagatgaggtgaagaataaatactactatgctctctat
gacatggttgttcgtggcaactgcttctgttatggtcactcctccgagtgtgcaccaggg
gacgacagcgaggatgggcctgaaggcatggtccacggcaaatgtgtgtgcaatcatcac
acgtctggattaaactgtgagaggtgtcaagacttttatcaagacgtcccatggagacct
gcagagggcagaaacacaaatgagtgcaagaagtgtgagtgtaatcagcactcaaatgcg
tgtcacttcaacatggcgatgtatgttgcatcggggaacaggagtggaggagtgtgtgat
gattgtcaacacaacactcaggggcaacactgtgagggatgcaagcccttctactaccag
catcctaacagggacataagagaccctcacatctgtgaacggtgtgactgtgacatatgg
ggctcactgaacggcggtgtgtgcgacagtgcgactgacgtgatgagaggactaatcgcc
ggtcaatgtcgctgtaaggagaatgtggagggagaacgctgcgatcactgcaaacgagga
tactacgggctcagccaagacatgctaggctgccttccatgcagctgtaatcctctgggt
actcttcctggaggaaatccctgtgacacagatacaggaatatgttattgcaaacgcctt
gtcactgggcgaaactgtgatcggtgtcagcctcagcactggggcctgagcaccgataag
gatggctgtcggccatgtgactgcgatctcggaggagctctgaacaacgattgttctcca
catacagggcagtgtgtgtgtcgagagcacatgtctggcagacgctgtaacaccttaaac
cccggatattatttcactgcccttgaccactacacttatgaggcagaggaagctgcattc
ggaccggcagtgacagtggtgacgaggcctattcctcggcctgcagatcgacacccaacc
tggactggtgttgggttcgccaaagtacctgaaagagaaaccctgcagtttaccattgac
aacattccacagtctatggattatgacttgttgatccgctatgaacctcagttacctgaa
gtgtgggagcaggtgagagtagatgtgacacagcctgcttatcctctcacgcctgcaaaa
tgtttaggttcattctctgaccatcagaccatctcacttcctcctggctccaggtatatg
gtcttgtccaggccactgtgtttagaaaagggcgagaaatacacggtgaaattaaatctg
tcccatttctcatcaaatgattttcatcaccagccacacatcttgattgactctattgtg
ctgttgcctgttgttcgagatctggaaatgttctcaggatcagctgacggagaggcggcg
tgggaaatgtttcagaaataccgctgtctcgagaacagcaagagcgtccagaaattaccc
atgaacgacatctgcagaggatacatcttcagcgcgtcagctctgcttcaacagggagct
atggaatgtgagtgtgacctactaggctctaacagtacgatgtgtgatcctaatggtggc
cagtgcctatgcaggaaaaatgtgataggcaggaagtgtaacagctgcgccccaagtacc
ttccagctggaaccttcaggctgcaggccatgtgagtgtgacccactgggctcaaagaac
cctttctgcaattcgaccacaggccagtgcttgtgtttacccggtgtttatggacgtcag
tgtgcccactgtctccccaggcactggggcttcccacactgccaacaatgcttctgtaat
gggcacggggagcactgtcaccctcaaacaggccagtgcttagagtgcagagaccacacc
acaggagaccagtgtgagaggtgcaagactggttaccacggcaatgcgttaataggcagc
actgaccgctgtcggccctgtatgtgtcctgatggcccggacagtggaagacagtttgca
gacacctgctaccaaaaccctacttcactccagcttgtctgtgtgtgcagccaaggatac
aaaggaccaaggtgtgaggactgtgcacctggttactatggcaacccacaggtgtcaggc
ggacggtgccacccatgccagtgtaatggcaacataaacatgcacgatccgttgtcctgt
gatgcccgcacagggatctgtctcagatgcctgcataacactgaaggccaggcgtgtcag
cattgtcgccgtggttactatggagatgctagcacccagaactgccagaggtgcatgtgc
cagcctttgggtactgacagttccaggtgtgtagacggtgagtgtcagtgtaaccaggtg
agtgggcagtgcccatgcttacccaatgtagagggtctgcactgtgaccactgtgcccct
aacacctggaacttcaacagtgaagaaggctgccagtcatgccagtgtcatcccacacac
tcttatagccagtcctgcgatgtagtgtccggtcagtgtgtctgtatgccaggatttggt
ggtaggacctgtgatgagtgtaggcctctgttctggggtgatccagaagtcaggtgtcat
gcatgcgactgtgaccccaaaggcaccgctacaccacagtgtaacaaaacgtcgggagca
tgtgtgtgtgtcgagggtgtgggcggaccccggtgtgactcatgtgggcggggctatgtg
ggaaccttcccagactgccagccatgtcatcagtgcttccgtgaatgggatgtcacggtg
ggagagctgaccaatcagacgcagcagttagtggacacggtggaacaactgaaagttaca
ggtgtgacagcagcctatcaggagacaatagacagcctggaaggcggagccaagcaaatc
actcagatactagaggatgataaggctcagaaaactcttagacactctcaagagcttctg
cagcaggccaagagcatcatgactgatctggaaccctctctgaaccattcagaggtggat
gtaaagcagaccgctgaggaacatcgcagggttgcaaaggagcttattacgctcagtgtg
gatattcagaagcaacaagaaagctttaataacacacagcaacaggtgctgcgcatcaaa
cactccgacgcagtgggtgcagtagacagtattagggaatattaccaggagacagtagag
gcagaaagtcaagtcaatcggaccaccacaggttcacacagccatttggagcagtcagcg
agtcgacggaaagccacggaggtcagactgaaagccgaggagggagagtttgatcagaag
caacgattggacactcagatactgaacacactaaaccaggatctggagcgagatgagctt
tcacaacttagtgagaaggtgtgtggtggaaagtggagtccaaacggctgtggagaatgt
ggaggtttggggtgtgtgactgaggatggaaaacatcagtgtggaggacaggactgtaaa
ggtgtgcttacccaaaccaacaatgcatggaaaaaagctaaagacctggacaaggacatc
atggactcactaaaagaagtggaaaagctccagaggatggtttctactgctcaaggacgt
gcagaagagagtaaaagcagcgcacaggagatccaggagaaagccaataagaacaaagca
aaagttgagcagaccaatcaggagctgcgagagctcattcagcaaataagagactttctt
acaagtggaacagatctggagcgtattgaagcactatctgatgaagttctgaagatgaag
atgccagtgtttgttggcgagctgaagaacgtgacgtcagagatccggcagcacgtggcc
agtctgaccagcgtggacgatgtcctggctcaaagttctgaacaggcacaaacagctgaa
agactgctgcaacaggcacgctctataagtgaggaagctacacaactgagggaaaaagtg
gacaaagtgaaggcggcactaaacgaatcagagcacgctcagtctgtagcaaacgacagc
ttgaatgcaaccaagagtgaccttgtctacataaaacaacaaataaaaactgtggaatct
aaaacagtggcgtctgagtttatgttgagtaacaccactcatcggttgctggatcttgag
aagaacgtggttgcagtggaacagaaaactcgagaatccttcgacagtgctcaaagtgct
gaaaacaaggcagactatgtctctgacgacacggaccaaaccaaaaggaaactagattta
gaggttcagcctaagttccagtcggttcgaggcctgatggaggagaaagcattcggtgtg
tctgatgcacgacagagagcagaacgactgcaagaagaagcgaagaacttagctgctgat
gtcgttaccaaattaagtaatctaaatgagctggagcggatgttctccgtgaatcagaag
accctggcggagagagcagcagagatagaggagctggagaaagaggcccaggctgtgcta
caggaactcagccagactgtcacagtctacagcacctgtctgtaa
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integrated database retrieval system