Silurus meridionalis (southern catfish): 124401372
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Entry
124401372 CDS
T08004
Name
(RefSeq) probable ribonuclease ZC3H12D isoform X1
KO
K18668
ribonuclease ZC3H12 [EC:3.1.-.-]
Organism
smeo
Silurus meridionalis (southern catfish)
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smeo03019
]
124401372
Messenger RNA biogenesis [BR:
smeo03019
]
Eukaryotic type
mRNA degradation factors
Other degradation factors
RNases
124401372
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Zc3h12a
UBA_6
Regnase_1_C
zf-CCCH_2
zf-CCCH
zf-CCCH_4
Motif
Other DBs
NCBI-GeneID:
124401372
NCBI-ProteinID:
XP_046729607
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All DBs
Position
18:complement(25499259..25510116)
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AA seq
688 aa
AA seq
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MCIRKRVCVHVCVRGRVAVRIFILRFPCLWFKHTFEPLPHMLDHSARETFRRGRTHTQTR
CVAAGHRREPASSNTILPQTVETKRQTEGGFPLSRLSSRDKPPAHSFFFSKPYTRRTRGQ
PEEEALEDSHNRGPMQTHSDMEREQIKVKHFLKLGYSHSDIMRVLQTLSQDAPTNDILQE
LIKTCRTNATGAPGAPESSPKLIPRGCGSSLQHKQADTTYSDSYSSTPFRPVVIDGSNVA
ISHGNKVVFSCRGIQLAVQWFWDRKIRDITVFVPLWRKEQSRPGAPITDQHIMDELERRN
ILVYTPSRCVNGKRVVCYDDRYIVKLAYTSDGIIVSNDNYRDLQQENPEWKKFIEDRLLM
YTFANDIFMPPDDPLGRNGPTIENFLRKKPLISETKPPHCPYGKKCTYGVKCKFYHPERS
NQPQLSVADELRAKSQPSSMTDEVPPSPNGLFDYWTAATPAYQDQLTLDLSGLDLYSSPH
DSPSPSYLQRSLPALYKSIKSDQAYGSLEGSMSRLFLSDSALQTSLAYSSGCVTANSSDY
FLSGGSGMQSRRARSPDVPSRCYSPDLHILSGCQHGHTGYTRTLHPNQAYQRHAAYKNNN
DMPFCNEALPYPQSTSNRLKVPDMTWGQGLTEVMDGDNLTGRRRDVRSQLSTIFPQSIVD
QVMRLYPHTLDTAELVGLIQKYKNSAFL
NT seq
2067 nt
NT seq
+upstream
nt +downstream
nt
atgtgcataaggaagcgggtgtgtgtgcatgtgtgtgtaagggggcgtgtcgctgtgcgt
atttttattcttcggtttccttgcctttggtttaagcacacatttgagccacttcctcat
atgcttgatcattctgcgagagaaacgtttagacggggacgcacacacacacaaactcga
tgtgtggctgccggacacaggagagaacccgcctcctcaaacacaattcttccacaaaca
gtggaaaccaaaagacagactgaaggcggattccccctatcaaggctaagttcgcgggat
aaaccaccagcccactcttttttctttagcaaaccatacacacgaagaacacgtgggcaa
ccagaagaggaggcacttgaggactcgcacaaccgtggacccatgcagacacactcagac
atggagcgtgagcagatcaaggtgaagcatttcctcaagctgggttactctcattcggac
atcatgcgagtcctgcagacgctcagccaggacgcgccgaccaacgacatcctccaggag
ctgatcaagacgtgtcgcaccaacgccacaggagcaccaggggcaccggagagcagccct
aagctcatcccacgaggatgtggctcgtcgctgcagcacaaacaagccgatacaacgtac
tcggactcgtacagctcgacccccttcagacccgtggtcatagacggcagcaacgttgct
ataagccacggtaataaggtggtgttttcgtgccgagggatccagctggcagtgcagtgg
ttttgggacagaaagattcgtgacatcaccgtgttcgtacctctgtggagaaaagaacag
tcaagacctggggctcccatcacagaccagcacataatggacgagctggagcgaaggaac
atcctggtgtacactccgtcgcgctgtgtcaatggcaagcgggtggtgtgctatgatgac
cgctatatcgtcaagctggcctacacctcggatggcattatcgtgtcgaacgacaactac
cgcgacctgcaacaggagaatcctgaatggaagaagttcatcgaggacaggctgctcatg
tacacctttgccaacgacatattcatgcctcctgacgatccattggggagaaacggccca
acgatcgagaacttcctgagaaagaagcctttaatttccgagactaagcccccacactgt
ccatatggcaagaagtgcacctatggcgtaaaatgcaaattctaccatccagagcgctcc
aaccaaccgcagctctcagtggccgatgaattgagagcaaagagtcagccatcgagcatg
actgacgaggttcccccgtctccaaatggactctttgactactggactgcggccactccg
gcttatcaagaccagcttactcttgacctttctggtctcgatctttactcctctccgcac
gactctccgagccccagctacctgcagcgctcccttcctgctttgtacaagagcattaaa
agcgaccaggcatatggctcgctcgagggctccatgtcccgccttttcctcagtgactct
gccctacagacctcgctagcctacagcagcgggtgcgtgactgcaaatagcagtgattac
ttcctgtctggtggttccggcatgcaatcaaggcgggcgcgcagccctgacgtgccctcg
cgctgctacagtcctgacctccacatcctctcaggatgccaacacggacacaccggctac
actcgcacgcttcatccaaaccaagcgtatcaaaggcatgccgcttacaaaaacaacaat
gacatgcctttttgcaacgaggctctaccgtatcctcagtcgacatccaatcggctcaag
gtaccagatatgacctggggtcaaggtctaacagaggtcatggacggggacaatttgacc
ggaaggaggagagacgtgaggtcgcagctaagcacgattttccctcagagcatcgtggac
caggttatgaggttgtatccacacacgttggatacggcggagctggttgggctgatccag
aaatacaagaacagtgcctttctttga
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