Silurus meridionalis (southern catfish): 124401516
Help
Entry
124401516 CDS
T08004
Symbol
fdft1
Name
(RefSeq) LOW QUALITY PROTEIN: squalene synthase
KO
K00801
farnesyl-diphosphate farnesyltransferase [EC:
2.5.1.21
]
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo00100
Steroid biosynthesis
smeo01100
Metabolic pathways
Module
smeo_M00101
Cholesterol biosynthesis, FPP => cholesterol
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09100 Metabolism
09103 Lipid metabolism
00100 Steroid biosynthesis
124401516 (fdft1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01006 Prenyltransferases [BR:
smeo01006
]
124401516 (fdft1)
Enzymes [BR:
smeo01000
]
2. Transferases
2.5 Transferring alkyl or aryl groups, other than methyl groups
2.5.1 Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
2.5.1.21 squalene synthase
124401516 (fdft1)
Prenyltransferases [BR:
smeo01006
]
Terpene biosynthesis
Squalene/phytoene synthase
124401516 (fdft1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SQS_PSY
Octopine_DH
CNV-Replicase_N
HAUS4
Motif
Other DBs
NCBI-GeneID:
124401516
NCBI-ProteinID:
XP_046729853
LinkDB
All DBs
Position
18:complement(23831302..23841088)
Genome browser
AA seq
465 aa
AA seq
DB search
MAGVCCKSTAPFCSAFKRTLSVRHPAPISTPRSAPAACARGGAGRRRRRGGSALLGRPLH
LHPAAVGLHRPATTHSFCSSVQESMSDSRRACYIYLNQTSRSFAAVIQALDGELRHAVCI
FYLVLRALDTVEDDMTIPLEKKVPLLHHFHTFLHQPDWCFTESKEKDRQVLEDFPSISVE
FRNLAQEYRDVISDICHRMGVGMAEFLEKKVDSMQEWDKYCHYVAGLVGVGLSRLFSASL
LEEPEVGRDTELANSMGLFLQKTNIIRDYLEDQQEGRSFWPEEAWSQFASHLEDFAQPQH
LSSALACLNLLVTDALRHVPDVIAYLSRLRNQSVFNFCAIPQVMAIATLSACYNNPLVFQ
GVVKIRKGQAVTLMMDATSMQAVQSMIAQYSQEILQKVSLSDPSRDNTLCILGVIQEKTL
SKATLPARSHNFSHLYLSAATILAFFSWQYLNATQSPNSADMQGR
NT seq
1398 nt
NT seq
+upstream
nt +downstream
nt
atggcgggggtttgctgcaagagcacggcgccgttctgctccgcgttcaagcgcactctg
tcggtgcgccacccggccccgatatccaccccgcgctcagcgcccgcggcctgcgccaga
ggaggcgcggggcggcggcgtcggcgtggcggcagcgcgctcctcgggcgcccgctgcac
ctccatcccgccgccgtcggccttcaccgacccgcaacaacgcactcgttttgctcttct
gtccaggagtcgatgagcgacagccggagagcgtgctacatctacctgaaccagaccagc
aggagcttcgccgctgtgatccaggccctcgacggagagctgcgccatgcagtgtgtata
ttctaccttgttcttcgagccctggacacagttgaggatgatatgaccattcctctggag
aaaaaagtccctctcctgcatcatttccacacgttccttcaccaaccagattggtgtttc
acagagagcaaggagaaggacagacaagttctagaagattttccttcgatttcagttgag
ttccgaaacctggctcaggaataccgggatgtcatttcggacatttgccaccgaatgggg
gtcgggatggcggagttccttgaaaagaaagtcgactcgatgcaggaatgggataagtac
tgtcactacgtggctggtctggtaggcgtgggtctgtctcggcttttttccgcatcgttg
ctggaggaacctgaggtgggtcgggatactgaattagccaactctatgggccttttttta
cagaagactaacattattcgagactacctagaggaccagcaggaaggcagatccttctgg
cctgaggaggcttggagtcagtttgcctctcatctggaggactttgctcaaccacagcac
ctgagttcagctctagcctgccttaacctgttggtaactgatgctctgcgccacgtcccc
gatgtcatcgcttacctttcccgtctccgtaaccagagtgtcttcaacttctgtgccatc
ccccaggtgatggcgatagcgactctctccgcctgttacaacaacccactggtgtttcag
ggggtggtgaagatcaggaaggggcaggctgttactctgatgatggatgccaccagtatg
caagctgtacagagcatgatagcccagtacagccaggagatcctgcagaaagtgtcgctg
tctgatccgtcgcgggataacacactgtgcatccttggtgtgatccaggaaaagacactt
tccaaggcgacgttgccggcccgctcccacaatttctcacatctttatctttctgccgct
acaattttagcttttttcagctggcagtatctaaacgccactcagtctccgaacagtgcg
gacatgcagggccgctga
DBGET
integrated database retrieval system
