Silurus meridionalis (southern catfish): 124401528
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Entry
124401528 CDS
T08004
Symbol
nup107
Name
(RefSeq) LOW QUALITY PROTEIN: nuclear pore complex protein Nup107
KO
K14301
nuclear pore complex protein Nup107
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
124401528 (nup107)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smeo03019
]
124401528 (nup107)
03036 Chromosome and associated proteins [BR:
smeo03036
]
124401528 (nup107)
Messenger RNA biogenesis [BR:
smeo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
124401528 (nup107)
Chromosome and associated proteins [BR:
smeo03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
124401528 (nup107)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup84_Nup100
DUF2310
Phage_int_M
TPR_IFT80_172
Motif
Other DBs
NCBI-GeneID:
124401528
NCBI-ProteinID:
XP_046729869
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All DBs
Position
18:2349299..2365103
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AA seq
923 aa
AA seq
DB search
MDWSQNWLNSPVVRDSEVTRAARRKSSHKKVAFPLAQDASPSAAISDGATPARPLLRHTP
GSLLKHTFTPKSALKHPEVSAILGTGSRTPRFVHTPRPKGSLSMNLGDSDWTNSLYXSPL
SVLGDGSFTDEMNMSAVMLKEDDPGEAASVSLFPDFLQSYLRHTSTAVFHLLDDYEAICQ
EKVNTLQKLVLLSSSAQQKSSKTASITWLLQQETVTWRLINSLYRDRIQTAMEDGLMMDI
TSPSESEKFIMEQFFQRDSMVRQSQLVVDWLESIAKDEIGDFSDNIEYYAKSVYWENTLH
TLKLRRDQSSTSFSRPLVTELDPDAPIRQKRPLADLDREDDTRLLRYIYTLIRAGMTDEA
QRLCKRCGQAWRAATLEGWKLYHDPNNSDGGVELQPVEGNPQRCVWKVCCWRMAEEEQFN
RYERAIYAVLSGNLRQLLPVCESWEDTVWAYFRVLVDSLLEQELRSSGLSREELEELPRE
YLEASWTMEKVFEELQATESKRVLEATKEHYHIIQKFIILGDLDGLLEEFGDWLGRTPSL
PAHLLRFMTHLVLFYRSLGMQLKEEVCVDVLKAYISLLVKEKQVELIAHYVSHLPVDMSV
SQYARFLEEVTETEQRRRCLELARQAGLDVSAVTKTVVETVRERDEEEFSHHDLTPALDM
GTTAEDRQKIDVIDWLVFDPAQRAEALKQSNAIMRKFLASKKHEAAKLVFAKVPEDSMRE
IYRQWEEQGMNTPLPAEEDNAIREHLCVRAYLEAHEAFNEWFRHMNSPPVKPTPPTQAKF
TETLAYEMKEQEYMTKYENWQGQLDVLTVDVKERIYNVLLFVDGGWMVDVREDGEVDSER
SIQMALLRRLCLPMMTFLLLTVLQRTERHQESLRLADIIASDQHRLYEVFSKDELQKFLQ
KIRESSLLLLDKGFDSLGYEIQS
NT seq
2772 nt
NT seq
+upstream
nt +downstream
nt
atggactggagtcagaactggctgaactccccggtggtccgggattccgaagtgactcga
gccgcgcggaggaaaagctctcacaagaaggttgcgtttcctctcgctcaggatgcatct
ccttcagctgctatcagtgacggcgcgaccccggcgcgacccctgcttcgtcacaccccc
ggctctctcctcaaacacacgttcaccccgaaaagcgccctgaagcaccccgaagtgtcc
gccatcttgggcacaggaagcaggacgcctcgcttcgtccacacgccgcgtcccaaaggc
agccttagcatgaacctgggcgacagcgactggacaaacagtctctacncgtctcctctg
tccgttctgggagacggaagcttcacagatgagatgaacatgagtgctgttatgctgaag
gaggatgatccaggagaggctgcatcagtcagtctgttcccggacttcctgcagtcgtat
ctgcgtcacacctccaccgctgtgtttcacctgctggacgactatgaggccatttgtcag
gagaaggtgaacacgctgcagaagctggtcctgctctcatcctctgctcagcagaaatcc
tctaaaacagccagcatcacttggcttctgcaacaggagaccgtcacctggagactcatc
aactctctgtacagggacaggattcagacagccatggaggatggtttgatgatggacata
acttctcccagtgaaagtgagaagtttataatggagcagttctttcaaagggacagcatg
gttcgacaaagccagttggtagtagactggctcgaaagcatcgccaaggacgagattggc
gatttctcagataatattgaatactacgccaaatctgtgtactgggagaacacgctacac
accctgaagctgaggagagatcagtcaagcacgtcattcagcagacccctggtgaccgag
cttgaccccgacgcccccatcagacagaaacgcccactggccgacctggaccgggaggat
gacacacgtctcctcagatacatctacacgctcatccgcgccggcatgaccgacgaggct
cagagactgtgtaagagatgtggtcaggcctggcgcgccgccactctggaaggctggaaa
ctttatcatgaccccaataacagtgacggtggggtggaactgcagccagtggaggggaat
cctcagaggtgtgtgtggaaggtgtgctgttggaggatggctgaggaggaacagttcaac
aggtatgagagagccatctatgctgttctgagtggaaatcttcgacagctgttgccagtg
tgcgagtcatgggaggatacggtgtgggcgtatttccgcgtgctagtcgactcgttgcta
gagcaggagctgagatcctcagggctgagtcgtgaggagctcgaggaactgcccagagaa
tacctggaggccagttggacgatggaaaaggtctttgaggagctgcaagcaaccgagtcg
aagagagttctggaagcaaccaaggagcactaccacattattcagaagttcatcatcctc
ggagacttggatggtcttttggaagagtttggtgattggttaggaaggacaccatcatta
ccggctcatctcctgcgcttcatgactcacctggtgctcttctatcgcagtctgggcatg
cagctgaaggaggaggtgtgtgtggacgtgctgaaagcctacatctctctgctggtgaag
gagaagcaggtggagctcatagcgcactacgtcagtcacctgcctgtggacatgagcgtg
tctcagtacgcacgcttcctggaggaagtgaccgagacggaacagcgccgacgctgcctg
gagctcgcgcgacaagctggtctggacgtctctgcggtcacgaagacggtggtggagacg
gtgagagagagagacgaagaggagttctcacaccatgacctcactcctgccctggacatg
ggaactacagcggaggatcgtcagaagattgacgtcatcgattggctggtgtttgacccc
gcccagcgagccgaggctttgaagcagagcaacgccatcatgaggaagttcctcgcttcc
aagaagcatgaagctgctaaactggtctttgccaaagttccagaagattccatgagggaa
atctaccggcagtgggaggagcagggaatgaacacgcccctgcctgccgaggaagacaac
gccatccgggaacatctctgtgtccgagcctacctggaagctcatgaagcttttaatgag
tggttcagacacatgaactcgcccccagtgaagcccaccccgcccacccaggccaagttc
actgagaccctcgcatacgagatgaaggagcaagagtacatgacaaaatatgagaactgg
caggggcagctggatgttctgactgtggatgtgaaggagaggatctacaacgtgcttctg
tttgtggatggaggctggatggtggatgtccgagaggatggagaggtggactcagagcgc
tctatccagatggctctgctccggcgcttgtgtttgcccatgatgacgttcctgctgctg
acggtgctgcagagaaccgagcgtcaccaggagagtctccgcctcgctgacatcatcgcc
tctgaccagcaccgactctacgaggtgttctctaaagacgagctgcagaagttccttcag
aagatcagggagtcgtctctgctgttgctggataaagggttcgattctctcggttatgag
attcagtcctga
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