Silurus meridionalis (southern catfish): 124401709
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Entry
124401709 CDS
T08004
Symbol
btaf1
Name
(RefSeq) TATA-binding protein-associated factor 172 isoform X1
KO
K15192
TATA-binding protein-associated factor [EC:5.6.2.-]
Organism
smeo
Silurus meridionalis (southern catfish)
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
smeo03021
]
124401709 (btaf1)
Transcription machinery [BR:
smeo03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Others
124401709 (btaf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3535
SNF2-rel_dom
HEAT
Helicase_C
HEAT_EF3_N
Vac14_Fab1_bd
HEAT_2
TOR1L1_N
TPR_Trm732_C
HEAT_EZ
UTP20
Motif
Other DBs
NCBI-GeneID:
124401709
NCBI-ProteinID:
XP_046730096
LinkDB
All DBs
Position
2:complement(12218261..12241699)
Genome browser
AA seq
1865 aa
AA seq
DB search
MAVSRLERLFILLDTGTTPVTRKAAAQQLGDVVKLHPHELNNLISKVLTYLRSPNWDTRI
AAGQAVEAIVKNIPEWNPAPKPKEESCAEDMSPEDNSSDRLSFYRFDISRLLRHGASLLG
SAGAEFEVQDDKSAEVDPKERLARQRKLLQKKLGLDMGAAIGMDTEELFNDEDLDYTCTS
SVNRSQTAKGVVFQSFRSHAPMQAAEFIDSEFRPGMSNRQKNKAKRMAKLVAKQRSRDLD
PNEKSNDSFEGEPEEKRRKTTNVIIEQPAAENKVLIDNIPDNSSLFDETQEWPLESFCEE
LCNDLFNPSWEVRHGAGTGLREVLKCHGAGGGKMVGSTSEQLAQQHQDWLEDLVIRLLCV
FALDRFGDFVSDEVVAPVRETCAQTLGVALRHMTEGGVNMTVDVLLKLLTEDQWEVRHGG
LLGIKYALAVRQDLISQLLPRVLPAVTDGLQDLDDDVRAVAAAALIPVVEGLVQLQPTKV
PFIVNTLWDALLELDDLTASTNSIMTLLSSLLTYPQVLQCSMQQSLTILVPRVWPFLRHT
IASVRRAALETLFTLLSKADQSCAMWLNPILQDMLRHIFQSCILESNQEILDLIQKVWVE
LIRQAPQQYVVAASCPWMGAWLCLMMQAPHIPIDLNMLLEVKARSKEKASGKFRQAGQQV
KETVQEYIGGADTVIEDPATRDYVVTRARLMAAKLLGALCSCICDPRLNSSTQEIRPAES
LAQLLLFHLNSKSALQRIAVSMVLCECACLQKECEVVSSVVQPRLLAILSEHLYYDEIAI
PFTRMQNECKQLIALLADANIDVREKINCSVFTIDQANELVTSIFSEATAPLNLKSRPLQ
SLDSKRQQACSTVAETSAEWQQMHLRVHTFAACAVVGMAALPDKLNPLVRPLMEAVKKEE
NTLVQGYAASSIARLLQLCTGRTPCPNSKIIKNLCSSICVDPMLTPNAECPVPPPTPPTQ
DGCKANMSEKDGMHHMVNKTKGIITLYRHQRAAFAITSKRGPAPKVQKTSPSDLPPGSSI
SAETDESKKPILIQRRGAEFSLTTIARHFGPDLTTALPSLWEAMIGPLKALETLGYDVPC
LDSKQLLEKGDLVAQDLVNSLQVLEVTTGAMAQELISVLLEQLALLCACLRHPYTAVRHM
AARCVGVFSKIATMETMNCFLEKVLPWFGAIDDSTKQEGAIEAMACVMEQLDVDIVPYIV
LLVVPVLGRMSDPSDSVRFMATQCFATLIRLLPLEAGIPNPPSMSDDLIRQKARERHFLE
QLLDSRKLENYTIPVPIKAELRKYQQDGVNWLSFLNKYKLHGILCDDMGLGKTLQSICIL
AGDHYLRAQEYARTKAADCCPLPSIVVCPPTLTGHWVDEVGKFCAKEYLNPLHYTGPPTE
RARLQHQVKKHNLVVASYDVVRNDIDFFRNIKFNYCILDEGHVIKNGKTKLSKAIKQLSA
NYRVILSGTPIQNNVLELWSLFDFLMPGFLGTERQFAARYGKPILASRDAKSSSREQEAG
VLAMEALHRQVLPFLLRRMKEDVLQDLPPKIIQDYYCNLSPLQVQLYEDFAKSRAKVNVD
DVLSTATQEEEDKPKLKATGHVFQALQYLRKLCNHPALVLTPQHPEHKRISEQLASQNSS
LRDIQHAPKLSALKQLLLDCGLGSSGSSDVSTEAVVAQHRVLIFCQLKSMLDMVEHDLLK
PQLPTVTYLRLDGSVPAGLRHSIVSRFNNDPSIDVLLLTTHVGGLGLNLTGADTVVFVEH
DWNPMRDLQAMDRAHRIGQKRVVNVYRLITRGTLEEKIMGLQKFKMSIANTVISQENASL
QSMGTDQLLNLFTLDKAEKLEKCEGASSSSGKTNMKSVLDGLGELWDQQQYEAEYNLDHF
MLSLR
NT seq
5598 nt
NT seq
+upstream
nt +downstream
nt
atggctgtctcgaggcttgagcgtctattcatcctgttggacactggcacaactcccgtg
acgaggaaagctgctgcacaacagctgggagacgtagtcaagctccatccacatgaactg
aataatctaatatcaaaggttttaacatatctgaggagtcccaactgggacacgcgaatt
gcagccggtcaggcagtagaggccatagtaaaaaatattcccgaatggaacccagctccc
aagccaaaagaagagtcctgtgcagaagacatgtctcctgaggacaactcttcagataga
ctcagtttctataggtttgacatctcccgtttgctcagacatggagcgtcgctgcttggt
tctgctggtgcagagtttgaagtacaggatgacaagtcagctgaggtggatcctaaggaa
cgtttggctcgacagaggaagcttctgcagaagaagcttggtctagatatgggtgctgct
ataggcatggatacagaggagctgtttaatgacgaagacttggactacacctgtacctcc
agtgtaaataggtcgcagactgccaagggggttgtgttccagagtttccgcagccatgca
cccatgcaggcagcagagtttatagactctgaatttcggccaggcatgagcaatcgtcag
aagaacaaggctaaaaggatggccaagctggtggcaaagcagaggtctagagatttggac
cccaatgaaaaaagcaatgacagcttcgaaggagagcctgaagagaaacggcgaaaaacc
acaaacgtaatcatcgagcagcctgctgctgagaataaagtcttaattgataacattcct
gacaactcaagtttatttgatgagactcaagagtggcctttggagagtttctgtgaagag
ctttgcaatgacctgtttaatccatcctgggaggtgcggcacggggcaggcacaggcctg
agggaggtcctgaagtgtcatggtgcgggaggaggaaagatggtgggcagcacttcagaa
cagttagcccagcagcatcaagactggttggaggacttggtcatcaggcttctgtgtgtc
tttgctttggaccgttttggagactttgtgtctgatgaagttgttgcaccagtcagagaa
acttgtgcacaaacattgggtgtggctttgagacacatgactgagggtggtgttaacatg
actgtggacgttttgttgaagctgcttactgaggatcagtgggaggttcggcatggaggt
ctgttgggcattaaatatgctctagctgtcagacaggatcttatttcgcaactgcttcct
cgagtacttcctgccgttactgatgggcttcaagatctggatgatgatgtgcgtgcagta
gcagctgctgctcttatccctgtagtggagggactggtgcagctacagcctactaaggtt
cctttcatagtaaatacactctgggatgctctgctggagctggatgacctcacagcatct
acaaacagcattatgactttactttcatccttgctcacttacccccaggtcctccagtgc
agcatgcagcagtcactaaccattttggttcctcgagtgtggccatttcttagacacacc
atcgcttctgttcgacgtgccgccttagagacacttttcacgctgctgtccaaggctgat
cagagctgtgccatgtggctgaaccccatcctacaagacatgctgaggcacatatttcag
tcctgcattctcgagagcaaccaggagattctcgatcttatccagaaggtgtgggtcgaa
ctgatacggcaggcccctcagcagtatgtggtagcagccagctgtccgtggatgggtgcc
tggctctgtttgatgatgcaagcacctcacattcccattgacctcaacatgctattggag
gtcaaggctcgatccaaggagaaggcgagtgggaagtttcggcaggcaggacagcaggtg
aaggagactgtacaagagtacatcgggggggcagacactgtaattgaagacccagccacg
agagactacgtagtcactcgtgcccgactcatggctgccaaactgctgggggcactgtgc
agctgtatctgtgacccacgattaaacagctcgactcaagagattcgaccagcagaatca
ttagctcagcttcttctcttccacctcaactcgaagtcagcactacagcgcattgctgta
tccatggtgctgtgtgagtgtgcatgcttacagaaggagtgcgaagtggtgtccagtgtg
gtccagcctcgtcttttggccatcctctctgagcatttgtattatgatgagattgctatc
ccttttacacgcatgcagaatgaatgcaagcagctcatcgcactcctggctgatgctaat
atcgacgtgagggagaaaatcaactgcagtgtcttcacaattgatcaggccaatgagctg
gtgaccagcatcttctctgaggccacagcacctttgaacctgaagtctcggccgttgcag
tcgttggacagtaagcggcaacaggcgtgctctacagtggctgagacgagtgccgagtgg
cagcagatgcatctacgtgtgcatacttttgcggcctgtgctgtggtaggcatggcagct
ctgcctgacaagctcaacccgcttgtacgtccccttatggaggcagttaagaaggaggag
aacacgctggttcagggatatgctgcatccagcatagcccgcctgctccagctctgcaca
ggccgcacaccctgccccaattcaaagatcattaaaaacttgtgcagctctatatgtgta
gaccccatgctcacgcccaatgcagaatgccctgttccaccccccacacctccaacacag
gatggctgcaaagccaacatgtctgagaaagatggcatgcaccacatggtgaataaaaca
aaaggtatcatcacgctttaccgacatcagagagcagcttttgccatcaccagcaagaga
ggccctgcccccaaagtgcaaaaaacatcacccagtgaccttccaccaggcagctcaatc
tctgcagaaactgatgagtctaagaagccgatactcatccagcggagaggtgcagagttc
tcattaacgactattgctagacattttgggcctgatctcaccacggctttgccgagtctc
tgggaggctatgattggcccactgaaagctctggaaacgctgggttatgatgtaccgtgt
ttagattccaagcagctcttggagaagggtgacttggtagctcaggatttggtcaactct
ctgcaggtgctggaggtcactacaggagccatggcccaggagctcatatctgtgcttttg
gaacagctggctcttctgtgtgcatgtctcagacacccgtacacagctgtgcgtcacatg
gccgctcgctgtgttggcgtgtttagtaagattgccactatggaaaccatgaactgcttc
ctggagaaggtgcttccatggtttggggcgattgatgacagcaccaaacaggagggagct
attgaagcaatggcttgtgtgatggaacagctggatgtagatattgtaccctacattgtg
ctgttggtggtgcctgtgctgggccgcatgagcgatccaagtgacagtgtgcgcttcatg
gccactcagtgttttgctactctcatacgccttttgcctctggaggctggcatccccaac
ccaccctctatgtcggatgatctgattcgtcagaaggccagagagcgtcattttctggaa
cagctactggatagcagaaagctggagaattacacgatccctgtccctattaaggcagaa
ctcaggaaatatcagcaagatggagtgaattggttgtccttcttaaataagtacaagctg
catggaatcctatgtgatgacatgggtttgggtaaaacccttcaatccatctgcattctt
gctggagaccactacctcagggcacaggaatacgctaggaccaaagctgcagactgttgt
cctctgccctctatagttgtgtgcccccctactctgacaggccattgggtggacgaggtt
ggcaagttttgcgctaaggaatacttgaaccctctgcactatacaggtccacctacagag
agagcacgattacagcaccaagtgaaaaagcacaaccttgtggtagcttcgtacgatgta
gtccggaatgacatcgacttttttaggaatataaaattcaattactgtattctcgatgag
ggtcatgttattaaaaatgggaagaccaaattatccaaagcgatcaagcaactgtctgcc
aactacagagttatcctctcaggaactcctattcagaataatgtcctggagctgtggtct
ctctttgacttcctcatgccaggctttttgggtacagagcggcaatttgctgctcgttac
gggaagcccatccttgctagcagagatgccaaaagctcgtcacgggaacaggaagcaggg
gttttggctatggaggctctgcatcggcaggtgttaccctttctcctgaggaggatgaaa
gaggatgtcctacaagatctgccacccaaaattatacaagactattactgcaacctaagt
cctctccaggttcagttgtatgaggactttgccaagtctcgggcgaaggtcaatgtggac
gatgtcctctccactgcaactcaagaggaagaggataagcctaaacttaaggctactgga
cacgtgttccaggcactgcagtacctgaggaagctgtgtaaccacccagcgctggtcctg
acacctcagcatcctgagcacaagcgcattagcgagcagcttgcctcccagaattctagc
ctccgtgacatccagcatgcaccaaaactctctgcacttaaacagttgctgttggactgt
ggtctgggctcatctggctcttcagatgtcagcacagaggctgtggtggctcagcaccgt
gtgcttatcttctgccagctgaagagcatgttggacatggtggagcatgacttattaaag
cctcagctgccaacagtcacctacctacgtctggacggaagtgtgcccgcaggcctgcgc
cattcaattgtctccaggttcaacaacgatccgtctatagatgtgttgctcctgacgaca
catgtaggtggtctgggcttgaacctcacaggcgctgatactgtggtgtttgtggaacat
gactggaacccaatgagagacctacaggctatggaccgtgctcatcgaataggacagaaa
cgtgtggtgaacgtgtatcgtctgatcacacgtggcactttggaggagaagatcatgggt
ctgcagaaatttaagatgagcatagctaacacggtgatcagccaggagaacgccagcctc
cagagcatgggcacagatcagctgttgaacctttttaccctggacaaggcggaaaaactc
gagaagtgtgaaggggcgtcctcctcctcaggaaagaccaatatgaagtctgtactagac
ggcctgggggagttgtgggaccagcagcagtacgaagcggagtacaatttggatcacttc
atgctctcgctgcgttaa
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integrated database retrieval system
