Silurus meridionalis (southern catfish): 124401893
Help
Entry
124401893 CDS
T08004
Symbol
shank3b
Name
(RefSeq) SH3 and multiple ankyrin repeat domains protein 3 isoform X1
KO
K15009
SH3 and multiple ankyrin repeat domains protein
Organism
smeo
Silurus meridionalis (southern catfish)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ank_2
SAM_1
Ank
Ank_4
SAM_2
SH3_2
Ank_3
Ank_5
SH3_9
PDZ_6
PDZ
SH3_1
FERM_f0
Motif
Other DBs
NCBI-GeneID:
124401893
NCBI-ProteinID:
XP_046730391
LinkDB
All DBs
Position
18:complement(6000272..6037102)
Genome browser
AA seq
1655 aa
AA seq
DB search
MPMSPPADGKHEAPDRPRQQHAPTNGNHGDDSIRGSPGSKGVSNDSMEDLHGNAVIIRIG
IPDLQQTKCLRLDLEAPVWVCKQRVLVTLTQSLTDVLNYGLYLPAFNGRAGKFLDEERLL
REYPLPTVTPVPYLEFRYKRRIYTQSHVDDKQLAKLHTKANLKKFMEYVQQRSVEKVCRF
LEKGLDPNFHDVETGESPLTLAAQLDSSAELIKVLRSGGAHLDFRTRDGITAIHKAVQTH
NHIALTTLLDLGASPDYKDSRGLTPLYHSAMVGGDPYCCELLLYDHAQLGYSDENGWQEI
HQACRHGNVQHLEHLLFYGAEMSAQNASGNTALHLCALYNQDGCARVLLFRGANKDIKNY
NNQTAFQVAIIAGNFDLAEIIKIHKTSDVDCLSVAVPFRESPSYSSRRRGVCVSPRRSLM
RSASDNALDESLPAPSPAPSLHSLPPLEPDNINPSPHSPQGGHTRSLRRQARGHLSPGSP
VQRDPSPPAVSRGPKRRLYSAVPGRTFIAVSSHTPQGEGEITLNRGERVKVLSIGEGGFW
EGSVKGRTGWFPAHCVEEVQLRQYDPRLETREDRTKRLFRHYTVGSYDNYSSYSDYVIEE
KTATLQKRDSEGFGFVLRGAKAETPIEEFTPTPAFPALQYLESVDLDGVAWRAGLRTGDF
LIEVNGVSVVKVGHRQVVSLIRQGGSRLLMKVVSVTRKPDTGDVVRKKAPPPPKRDPSTS
LTLRSKSMTAELEEMASRRRRGEKLDEMLSSPKETVVVMRQRPSDADSRAATVKQRPTSR
RITQAEISSLLERQGMQISPGVSLGVDKSHMQLHGMTRTKSFGAPEDERISALIGEHRFP
RSSSMTDSFRQDSIPPPPQTAPPPPPTPYFLESGPPPSFLPPPPPTRAANQTRSSFRPGA
EPKLHGPVTTDRQRKARSMIILQDTAHLPVEPAPIPRPATPTSGAAPPERGRRRGQAVEN
PYANVGRLSAVYTPTKPQRRKSPLVKQGQVEEGTAAQAGTGRDPSPLGGARIPHSSRAEQ
FQQQVLSERARITPPGARRRTSVFLSVEGSTTEPQTTPLLSQSHSVDELAELPPPAPMLS
PGLPPGGSTFIHPLTGRPLDPSSPLALALAARERALSGRTTPTPTPTPSPSPTQGRVVER
PETEGGVTPPAALEASPSDSWREEPVSITTETASPVTNGSPVSGRSLEESIVTPTVQIVQ
SALIDTDHSQPVVPPSMPSPAPTLSNLAGRSMTMSSEEEAEPYTVTLPPALLSSSDEETR
EELRKIGIVPPPQPFANGLLIKETPKVTISISPGASPRPSIAKISSGKASDSTADSGVED
PHMETTSTVSTVSSMSTLSSESTDSAHASKPRCGVGRGRPAHLRDPLLKQSSDSELLPHP
PSTGPVRPRYLFQRRSKLWGEEPRAQVGIGDDSRPAAMGAELLSKDSHSLGEEPPMGALD
PGRRSPVGGARCKENGEESKSLFSSLGELHTISQRNYGTTFTIRPGSRYPVTRRTPSPGA
TPERSEPLGPMRAFGPHHHHHHHHTILKSSSLSLPQEPKEVRFVMRSASARARSRSPSPS
PCASPCPSPVLGAPLLALRPFRQRPLALWSKYDVGEWLESVGLGEHRARFVEHEIEGAHL
PALTKDDLAELGVTRVGHRMNIERALKQLLESSGA
NT seq
4968 nt
NT seq
+upstream
nt +downstream
nt
atgcctatgagtccacctgccgacggcaaacatgaggctcccgacaggccgcggcaacag
cacgcccctaccaacggaaaccatggagacgacagcattcgtggctctccggggtctaag
ggcgtctccaacgattccatggaagatctccacggaaatgccgtcattatccgcatcgga
atccctgaccttcagcaaacaaagtgtctgcgcttggacttggaggctccggtgtgggtg
tgtaagcagcgggttttggttactctgacgcagagcctgaccgacgttctgaattatggc
ctctacctcccggcctttaacggccgagccggcaagttcctggatgaagagagactgctc
agggagtatcctctccctactgtcacacctgtaccttacctagagtttcgctacaagaga
cgcatttacactcagagccatgtggacgacaagcaattagccaaacttcacactaaggcc
aatctgaagaaattcatggagtatgttcagcaaagaagtgtggagaaagtgtgcaggttc
ctggagaaagggctcgatcccaacttccatgatgtagaaactggagagtcaccccttacc
cttgcagcacagttggactcgagcgctgagctgattaaagttctaaggagcggaggagct
catttggacttcagaaccagagatggcataaccgcaattcacaaagctgtgcagacccac
aaccacatagctctaactaccctgttggatctgggagcgtctccggattataaagacagc
cgtgggctcactcctctgtaccacagtgctatggtggggggtgacccgtactgctgtgaa
ctgctgctgtatgatcacgctcagctcggctacagcgacgagaatggctggcaggagatc
caccaggcttgtcgtcacggaaatgtgcagcacctcgagcacttgttgttctatggagct
gagatgagcgcgcagaatgcctcaggaaacacagcgttgcacctctgtgctctctacaac
caggatggctgtgcccgagtgttgctatttcgcggagcaaataaagacatcaagaactac
aacaatcagacagcattccaggtggccatcatcgcagggaactttgacctggctgagatc
atcaaaatccataaaacctcagacgtagactgtctctctgttgcagtgcctttcagggag
agcccctcatactcgtctcggcgccgtggggtgtgtgtgtccccgcgccgctccctgatg
cgttcggccagcgataacgcactggacgagagtctgcccgcaccctcaccagccccttca
ctacacagcctgcctcctctagagcctgataacatcaatccgagcccacacagcccacag
gggggacacacacgcagcctcaggagacaagcacgtggacatctcagccctggcagtcct
gtgcagagggatcccagtccccctgctgtatcgcgagggccaaagcggaggctctacagc
gcggtacctggccgtaccttcatcgctgtcagctcacacactccgcagggtgagggtgag
atcacactcaaccgcggggagagggtcaaagtgctcagtataggtgaaggaggattttgg
gaaggctcggtaaaaggacgaaccggttggtttcctgctcactgcgtagaggaggttcag
ctgagacagtacgacccccgactagaaacgagagaagatcgcaccaagaggctttttaga
cattacacagttggctcctatgataattattcctcctacagtgattatgtaattgaagaa
aaaactgccacgctacaaaagagagacagtgagggatttggctttgttcttcgaggggct
aaagctgaaactccaattgaagaatttactccaactcctgcgtttcctgcgctgcaatat
ctggagtcagtagatctggatggggttgcatggagggcggggctacgaactggtgatttc
ttaattgaggtgaacggggtcagtgtagtaaaagtgggccatcggcaagtggtctctctg
attcggcaaggtgggagtcgtcttcttatgaaagtggtgtcagtgacccgaaaacccgac
accggagacgtagttcgcaaaaaggctcctccaccacccaagagagaccccagcacgagc
ctaaccctgcgctctaaaagcatgaccgcagagctggaagagatggcatcaaggagaaga
aggggagagaagttggatgagatgctgagttctccaaaagagacagtcgtggtgatgagg
caacggccttcagacgcagactccagagcagccactgtgaaacagagaccgacaagccga
cgtatcacacaggccgagattagttctttgttggaaaggcaagggatgcaaatatctcct
ggtgtgtcacttggtgtggataaaagtcacatgcaactgcacgggatgaccagaaccaaa
tcatttggtgcaccagaagatgaaagaatatctgctttaattggggagcaccgctttcca
agaagctcctcaatgactgacagctttcgacaagacagtattccacctccaccacaaact
gcacctcctccacctcctacaccatacttcctggaatcaggtcctcccccatctttcttg
cctcctccacccccaacacgtgcagccaatcagactcgttcaagcttccggccaggtgca
gagcccaagctccatggtcctgtcacaacagaccgccagaggaaggcacgttctatgatt
attcttcaggacaccgcccaccttccagtagagcccgcccccattcccaggccagcaaca
cctacctctggggcagctcctcctgagcgtggtcgtaggcgtggccaggctgtggagaac
ccatatgccaatgtgggtcgactaagtgcagtctatacccctaccaagccccagcgcaga
aagagtccactggtcaaacaaggtcaggttgaggagggcacagccgcccaggctggaact
ggtagggatccttctcccctaggaggagctcgaatccctcacagcagccgagcagagcag
ttccagcagcaggtgctctctgagagggctaggattacacctccaggagctcgtcgcagg
accagtgtgttcctttctgttgaggggagcaccaccgagcctcaaaccacccccttacta
tcccagtcacattcagtggatgagctggctgagctgccccctccagcacctatgctttct
cctggtctgccaccaggaggttccacatttatacatcctctcacggggcgtccattggac
ccctcctctccattagcacttgctttggctgcaagagagcgagcacttagtggacgtact
acaccaactcccactcccactccctcaccatcacccactcagggcagagttgtggagaga
ccagagacagagggaggagtcacgccacctgctgctcttgaggcttcaccttctgattcc
tggagggaagagcctgtaagcatcacgacagaaactgctagtccagtgacaaatggcagc
cctgtatctgggcgaagtttggaggagtccatcgtgacaccaaccgtgcagattgtccaa
tcagcattgattgacacagatcacagtcaaccagtagttccaccttctatgccttcacct
gccccgacgctttcaaacctggcagggcggagcatgacgatgagttcagaggaggaagca
gagccctacacagtcaccttgcctcctgcacttctctcatctagtgatgaagaaacaagg
gaggagctccgcaagattggcatagtcccaccccctcaaccttttgccaatggcctttta
ataaaggaaacacccaaagtcactatcagcatttctccaggtgcatctccaaggccttct
atagcaaagatctcctctggcaaagcaagtgattccactgcagactccggtgttgaggac
ccccacatggagactacaagtactgtttccacagtctctagcatgtccactttgtcgtca
gagagcacagactctgcccacgccagcaagccacgttgtggggtgggccgcggccgcccc
gcccatctcagggacccactgctcaaacagtcgtcagacagtgagctgcttccacaccca
cccagcacaggcccggttcgcccacgctacctgttccaaagacgatctaaactctggggg
gaagagcctagggctcaagtgggcataggtgatgatagtaggcctgctgcaatgggagca
gagttactaagtaaagattcacattctctaggcgaggagccaccaatgggagccctagac
cctggcagaaggtcaccagtgggtggcgccagatgtaaggagaatggagaagagagtaaa
tcactcttcagcagccttggtgagctccacaccatctcacaaaggaactatggcaccact
ttcaccatccgaccgggcagccgctacccagttacccgcaggacacccagccctggggcc
actccagagcgaagtgagcctctggggccaatgcgtgcatttggtccccaccaccatcac
catcaccaccatactattctcaagtcctccagcctgagcctcccacaggagcccaaggag
gtgcgctttgttatgcggagtgccagtgctcgtgcccgcagccgctccccttccccatcg
ccctgtgcctccccctgtccctcaccagttttgggtgctccactcctggcccttcggccc
ttcagacagcgccctcttgctctgtggagcaagtatgatgtgggcgagtggttagagagt
gtgggactaggggagcatcgtgcacgctttgtagagcatgaaattgaaggtgcgcatcta
cctgcgctcacgaaggacgatttagctgaattgggggtgacacgggtgggccaccggatg
aacattgagcgtgcacttaaacagctgttggagagctcaggcgcttaa
DBGET
integrated database retrieval system
