KEGG   Silurus meridionalis (southern catfish): 124401984
Entry
124401984         CDS       T08004                                 
Symbol
sec13
Name
(RefSeq) protein SEC13 homolog
  KO
K14004  protein transport protein SEC13
Organism
smeo  Silurus meridionalis (southern catfish)
Pathway
smeo03013  Nucleocytoplasmic transport
smeo04141  Protein processing in endoplasmic reticulum
smeo04150  mTOR signaling pathway
Brite
KEGG Orthology (KO) [BR:smeo00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    124401984 (sec13)
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    124401984 (sec13)
 09130 Environmental Information Processing
  09132 Signal transduction
   04150 mTOR signaling pathway
    124401984 (sec13)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:smeo03019]
    124401984 (sec13)
   04131 Membrane trafficking [BR:smeo04131]
    124401984 (sec13)
Messenger RNA biogenesis [BR:smeo03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Nuclear pore complex
     124401984 (sec13)
Membrane trafficking [BR:smeo04131]
 Protein recycling
  Rab GTPases and associated proteins
   Rab11 associated proteins
    124401984 (sec13)
 Endoplasmic reticulum (ER) - Golgi transport
  Forward pathways
   Coat protein complex II (COP-II)
    124401984 (sec13)
 Autophagy
  Other autophagy associated proteins
   SEACAT/GATOR2 complex
    124401984 (sec13)
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_WDR5 WD40 WD40_Prp19 Beta-prop_WDR3_1st WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_EML_2 Beta-prop_CAF1B_HIR1 Beta-prop_WDR3_2nd Beta-prop_TEP1_2nd EIF3I WD40_Gbeta ANAPC4_WD40 Beta-prop_RIG_2nd WDR55 WD40_MABP1-WDR62_2nd Beta-prop_EIPR1 Beta-prop_WDR90_POC16_2nd Beta-prop_Vps41 Beta-prop_WDR41 Beta-prop_EML Beta-prop_WDR19_1st Beta-prop_WDR36-Utp21_1st NBCH_WD40 Beta-prop_WDR36-Utp21_2nd
Other DBs
NCBI-GeneID: 124401984
NCBI-ProteinID: XP_046730495
LinkDB
Position
19:5333594..5340459
AA seq 320 aa
MVSVINTVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVKNGGQILVADLRGHEGPV
WQVAWAHPTYGNILASCSYDRKVIIWKEENGTWDKMYKYTGHNSSVNSICWGPYDFGLIL
ACGSSDGAISILTYTGDGQWDIKKINNAHTIGCNAVSWAPAVVPGSLIDQPSGQKPNYVK
RFVSGGCDNLVKLWKEEDGQWKEDQKLEAHSDWVRDVGWAPSIGLPTSTIASCSQDGRVF
IWTCDDPSGNTWTAKLLHKFNDVVWHVSWSITGNILAVSGGDNKVTLWKESVGGQWACIS
DVNKGQGAVTSITDGQQNEQ
NT seq 963 nt   +upstreamnt  +downstreamnt
atggtgtccgtcattaacactgtggatacctcccacgaggacatgattcatgatgctcag
atggactattatggcacaagactggcaacctgctcctccgatcgatctgtgaagatcttt
gatgttaagaacggtggccagattcttgtggcagacttgagaggacatgaaggccctgtg
tggcaagtggcctgggcacatccaacctatggcaacatcctggcctcgtgttcgtacgac
agaaaagtgatcatctggaaagaagaaaacgggacgtgggataaaatgtataagtacaca
ggccacaactcctcagtgaactctatttgctggggaccctacgactttggtttaatcctg
gcttgcggaagctccgacggtgccatctccattctgacctacactggagacgggcagtgg
gacattaaaaagatcaacaatgcacacactattggctgcaatgcagtgagctgggctcca
gctgttgttccaggcagcctcatagaccagccttcgggacagaaacccaattacgttaaa
cgatttgtctcaggaggatgtgacaacttggtcaagctatggaaagaggaggatggtcaa
tggaaggaggaccagaaactggaagcccacagtgattgggtgagagatgtaggctgggct
ccttctattggtcttcctaccagcaccattgccagctgctctcaggatggtcgcgtcttc
atctggacatgtgatgatccctctggaaacacctggaccgctaaactcctgcacaaattc
aacgacgtcgtttggcacgtcagctggtccatcaccggaaacatcctggctgtgtctgga
ggagacaacaaggtgactttgtggaaggagtctgtgggcggacagtgggcttgcattagc
gacgtaaataaaggccagggggccgtgacctccatcacagacggccagcagaacgagcaa
tga

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