Silurus meridionalis (southern catfish): 124401984
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Entry
124401984 CDS
T08004
Symbol
sec13
Name
(RefSeq) protein SEC13 homolog
KO
K14004
protein transport protein SEC13
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo03013
Nucleocytoplasmic transport
smeo04141
Protein processing in endoplasmic reticulum
smeo04150
mTOR signaling pathway
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
124401984 (sec13)
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
124401984 (sec13)
09130 Environmental Information Processing
09132 Signal transduction
04150 mTOR signaling pathway
124401984 (sec13)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smeo03019
]
124401984 (sec13)
04131 Membrane trafficking [BR:
smeo04131
]
124401984 (sec13)
Messenger RNA biogenesis [BR:
smeo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
124401984 (sec13)
Membrane trafficking [BR:
smeo04131
]
Protein recycling
Rab GTPases and associated proteins
Rab11 associated proteins
124401984 (sec13)
Endoplasmic reticulum (ER) - Golgi transport
Forward pathways
Coat protein complex II (COP-II)
124401984 (sec13)
Autophagy
Other autophagy associated proteins
SEACAT/GATOR2 complex
124401984 (sec13)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_THOC3
Beta-prop_WDR5
WD40
WD40_Prp19
Beta-prop_WDR3_1st
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
Beta-prop_WDR3_2nd
Beta-prop_TEP1_2nd
EIF3I
WD40_Gbeta
ANAPC4_WD40
Beta-prop_RIG_2nd
WDR55
WD40_MABP1-WDR62_2nd
Beta-prop_EIPR1
Beta-prop_WDR90_POC16_2nd
Beta-prop_Vps41
Beta-prop_WDR41
Beta-prop_EML
Beta-prop_WDR19_1st
Beta-prop_WDR36-Utp21_1st
NBCH_WD40
Beta-prop_WDR36-Utp21_2nd
Motif
Other DBs
NCBI-GeneID:
124401984
NCBI-ProteinID:
XP_046730495
LinkDB
All DBs
Position
19:5333594..5340459
Genome browser
AA seq
320 aa
AA seq
DB search
MVSVINTVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVKNGGQILVADLRGHEGPV
WQVAWAHPTYGNILASCSYDRKVIIWKEENGTWDKMYKYTGHNSSVNSICWGPYDFGLIL
ACGSSDGAISILTYTGDGQWDIKKINNAHTIGCNAVSWAPAVVPGSLIDQPSGQKPNYVK
RFVSGGCDNLVKLWKEEDGQWKEDQKLEAHSDWVRDVGWAPSIGLPTSTIASCSQDGRVF
IWTCDDPSGNTWTAKLLHKFNDVVWHVSWSITGNILAVSGGDNKVTLWKESVGGQWACIS
DVNKGQGAVTSITDGQQNEQ
NT seq
963 nt
NT seq
+upstream
nt +downstream
nt
atggtgtccgtcattaacactgtggatacctcccacgaggacatgattcatgatgctcag
atggactattatggcacaagactggcaacctgctcctccgatcgatctgtgaagatcttt
gatgttaagaacggtggccagattcttgtggcagacttgagaggacatgaaggccctgtg
tggcaagtggcctgggcacatccaacctatggcaacatcctggcctcgtgttcgtacgac
agaaaagtgatcatctggaaagaagaaaacgggacgtgggataaaatgtataagtacaca
ggccacaactcctcagtgaactctatttgctggggaccctacgactttggtttaatcctg
gcttgcggaagctccgacggtgccatctccattctgacctacactggagacgggcagtgg
gacattaaaaagatcaacaatgcacacactattggctgcaatgcagtgagctgggctcca
gctgttgttccaggcagcctcatagaccagccttcgggacagaaacccaattacgttaaa
cgatttgtctcaggaggatgtgacaacttggtcaagctatggaaagaggaggatggtcaa
tggaaggaggaccagaaactggaagcccacagtgattgggtgagagatgtaggctgggct
ccttctattggtcttcctaccagcaccattgccagctgctctcaggatggtcgcgtcttc
atctggacatgtgatgatccctctggaaacacctggaccgctaaactcctgcacaaattc
aacgacgtcgtttggcacgtcagctggtccatcaccggaaacatcctggctgtgtctgga
ggagacaacaaggtgactttgtggaaggagtctgtgggcggacagtgggcttgcattagc
gacgtaaataaaggccagggggccgtgacctccatcacagacggccagcagaacgagcaa
tga
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