Silurus meridionalis (southern catfish): 124402124
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Entry
124402124 CDS
T08004
Symbol
nfasca
Name
(RefSeq) neurofascin homolog (chicken) a isoform X1
KO
K06757
neurofascin
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
124402124 (nfasca)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
smeo04515
]
124402124 (nfasca)
Cell adhesion molecules [BR:
smeo04515
]
Immunoglobulin superfamily
L1 family
124402124 (nfasca)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
I-set
Ig_3
fn3
Ig_2
ig
Bravo_FIGEY
V-set
Ig_DSCAM-DSCAML_C
Ig_6
C2-set_2
Ig_5
Ig_VEGFR-1-like_5th
Pur_ac_phosph_N
Motif
Other DBs
NCBI-GeneID:
124402124
NCBI-ProteinID:
XP_046730775
LinkDB
All DBs
Position
19:complement(11165683..11242875)
Genome browser
AA seq
1384 aa
AA seq
DB search
MWPQGQWAPLAALSIIVLLWKEAAPIDVPPDPRIQQDLKQPPTIVKESVKDYIVDPRDNI
IIECEAKGNPVPTFWWRRNGKFFNVEKDPRVTMRKRSGTLEISFRNGGKPEDYEGEYQCF
AMNDFGTAISNKILLRVSKAPLWPKEVLEPVVVSEGSSLVLTCNPPPGLPPPKTFWMDSR
MMPIEQNARVSMGLNGDLYFSNVLAKDANTDYSCNARFLFTHTIQQKNPFILKVQTKEPY
NDTVYSPNDTFIYSESRNIPESTPSFLSPSGISSSKMVLRGEELLLECIAAGVPTPRIQW
FKKGGDLPEKKVHLENFNKTLSIKSVSDEDSGDYICMASNKMGSIRHTISVQVKAAPYWL
HTPSNLVLAPNENGQLQCLASGNPKPNIQWLVNGEPIESSLENPSRKVVDDAIIFSSVQI
GTSAVYQCNASNEHGYLLANAFVNILDMAPRLLGPKNQLIKVIENKQSFLDCPFFGSPYP
FVRWFKNGQGIVPNGGKYILHENGTLEIKRVRPEDEGTYTFVASNILGKAEDQVRLEVKE
PTRIVRAPEHRSSFRGSMARFDCKIKHDSTLPITVIWLKNDKPLHVSWMSKFKKEEDSLS
ISNIQPDDEGTYTCTVTTELDQDSASARLTVLEDESLTPSKTSALADRPDSPKDLELSDL
SARSVRLTWIPGNENNSPITQYLVQYEENRWKPGEWQNLSSYSGDQNSVNLNLSPFVNYQ
FRVIAINSVGQSRPSRPSARYQTSGAAPYVYPNGLKGWGTKKNNMEISWQPLLDNQRNGP
DLRYVISWRRKELKEEWNNITTTNTKHIVSDTDTYVPYEIKIQAVNDFGPGPESNIVIGY
SGEDRPTDAPGDLRVSKLNSNKVNIIWNPVEAKSINGEFKEYRLYYWREASLVKDLKVNK
DKKTKGFFSDASQNSGVLMDLVPYSKYKMYMVVANTKFEGPHSNTVEFQTKEGLPGAPKF
FRIVQRNASTIRLEWNKPLEPNGILIGYTLQYKTVNGTQEGKLQVLSFFPNETEHTMHLP
DRFTRYKFYLSARTQVGSGEVYAEESPHFANEEDFMTSGTDPTGVAIDSTDALVVTSLLP
PLAPPAIPSPTITTSTATTLAPTDASPTTPAPTTTTTTTITTTTTAATTTISSTTTTTTY
PTLPFLLAPHVKIWNLTVDANSDYANVSWKHNFPVDSSEFVLEFTLDSNGSMKSVLFKHE
PPIKLAGLIAGAKYRLRVYSHEHPRVTSEYVTFETSGAHSSDEVDIATQGWFIGLMCAIA
LLILILLIVCFIKRSRGGKYPVRDKKDLPLDPVDHKDQDGSYDYQNENSSDEDNKPLQGS
QTSLDGNVKESDDSLVDYGEGGDGQFNEDGSFIGQYTVRKDKEETEGNESSEATSPVNAI
YSLA
NT seq
4155 nt
NT seq
+upstream
nt +downstream
nt
atgtggccccagggacagtgggctcctctggctgcgctgtcaatcattgtgctgctgtgg
aaggaggcggctcccattgatgtccctccagatccaaggattcagcaggacttgaaacag
ccccctactattgtgaaggagtcagtcaaggactatattgtggatccccgagataacatc
atcattgagtgtgaggccaaaggcaatcctgtaccaacgttttggtggagacgaaatggg
aagttcttcaatgtggagaaggatccacgtgtgaccatgcggaaacgctcgggcacactg
gagatcagcttcaggaatggaggaaagcctgaggactatgagggagaataccagtgtttt
gctatgaatgactttggcactgctatatccaacaaaatactgctgagagtttccaaggca
ccactgtggcctaaagaggttttggagccagtggtagtaagtgagggatcatctctggtc
ctgacctgtaacccacctcctggccttccaccacctaaaacattctggatggacagcaga
atgatgcccatagagcagaatgctcgggtgtccatggggctgaatggagatctttacttc
tctaatgtgcttgctaaggatgccaacactgactacagctgcaatgcccgatttctcttc
acacacaccatccaacagaagaatcctttcatcctcaaagtccagacaaaagagccttat
aatgacactgtttactctccaaacgacacttttatatacagtgaatcacgtaacatccca
gaatcaacaccatcctttctctctccctctggaatatcaagctccaagatggttctccgg
ggagaagagcttcttctggagtgcatagctgctggagttccaactcctagaatccaatgg
tttaagaaaggaggggatttaccggagaaaaaggtccatttagaaaactttaataaaacc
ctgagcataaagtctgtttcggacgaggattctggagactacatctgcatggccagtaat
aagatgggcagcatccgacacactatctccgttcaggttaaagctgctccttattggctg
catacaccatctaacctcgtgctggctcccaatgagaatggacagctgcagtgtttagcc
agtggaaaccccaaacccaacatccagtggcttgtaaatggagagccaatagagagctca
ctggaaaatcctagcaggaaggtggtcgatgatgcaatcattttcagctcagtacaaatt
ggcactagtgctgtttaccaatgcaatgcttcaaatgagcatggctacctgctggccaac
gcttttgtcaacatactggatatggcacccagattattgggacccaaaaaccagctgatt
aaggtgatcgaaaacaaacaatcctttctggattgccctttttttggctcaccttaccca
tttgttagatggtttaagaatggccagggtatagttccaaatggtgggaagtacatcttg
catgaaaatggtactctggagatcaagagagttcgacctgaagacgagggtacttatact
tttgtggcaagcaacatcctgggcaaagcggaggaccaggtccgtttggaagtcaaagag
ccgacacggattgtccgagctccagagcaccgctcttccttcagaggaagtatggctcgt
tttgactgcaagattaagcacgattctaccctccccattactgtcatatggctcaaaaat
gacaagcccctgcatgtttcttggatgagcaagtttaagaaggaggaagactcgctgtct
attagcaacattcagcctgatgatgagggaacatatacttgcacagttactacagagttg
gaccaggactctgcatcagcccgccttacagttttagaggatgagtccctaactccctcg
aaaactagtgccttagcagatcgccctgattcccccaaggatttggagttgtctgatcta
tcagcacgctctgtccgtcttacttggatccctggcaatgaaaacaatagtcctattaca
caataccttgttcagtatgaagaaaatcggtggaaaccaggcgaatggcaaaatctgtcc
agttactcaggtgatcagaactcagtgaacctgaatctgtccccgtttgtgaactaccag
ttcagagtgatcgccatcaacagtgtgggtcaaagccgtccgagccgcccatcagctcgc
taccagaccagtggagcagctccttatgtttatcccaatggcctaaaaggttggggtacc
aagaaaaacaatatggagatctcttggcagccccttcttgataaccaaagaaatgggcct
gatctacgttatgtcatctcatggaggaggaaagaattgaaggaggagtggaataacatc
accactactaatacaaagcatatcgtcagtgatacagacacttatgtcccatatgagatc
aagatccaggcagttaacgactttggtccaggccctgaatcaaacatagtgattggctac
tcaggggaggacaggcctacggatgcacctggagacctcagggtgtcaaaattaaacagc
aataaagtaaatataatttggaatcctgttgaggccaaatccattaatggggagtttaaa
gagtacaggttatattactggagggaggcaagcctggtgaaagacctgaaggtgaataag
gacaagaaaactaaaggcttcttcagtgacgcatctcaaaacagtggggtcctaatggac
cttgtcccttatagcaaatacaagatgtacatggtggtggccaacaccaaatttgaggga
ccacacagcaacactgtcgagtttcagaccaaggaaggcttgccaggggctcctaaattc
ttcaggattgtccagaggaatgccagcaccattcgcctagagtggaataagcctctagag
ccgaatggaattctgatcggatacacacttcagtacaagacagtgaatgggacacaggag
ggcaagctacaggttctgagtttcttccctaatgagacagagcacaccatgcacctgccc
gaccgatttacccgctacaagttctacctgtcagctcggacgcaggttggctctggtgag
gtctatgctgaggagtcacctcactttgccaatgaagaagactttatgacttcaggtact
gaccctacaggtgtagcgatcgattctacagatgccttggtggttacatctcttctcccc
ccccttgccccacctgctatcccaagtccaaccattacaacctcaacagcaaccaccctt
gcccctactgacgccagtcccactactcctgctccaactacgacaacaacaactactatt
actactactactactgctgctacaactaccatttccagtactaccaccactacaacctac
cccaccctgcctttcttgctggccccgcatgtaaagatctggaatctgaccgtggatgct
aacagtgactatgctaacgtcagctggaagcacaacttcccggttgacagcagcgagttt
gtgctagagttcacactggacagtaatgggtctatgaaaagcgtgctgttcaaacatgaa
cccccaattaagctggctgggttgatagctggagctaagtaccggctccgtgtgtattcc
cacgaacatcccagagtcaccagcgagtatgtcacctttgagaccagtggagcccacagt
tcggacgaagtcgacatagccacgcagggttggtttattggcctcatgtgtgccatcgca
cttcttattctcatcctgctcattgtttgctttatcaaaagaagccggggaggaaaatat
ccagtgagagataaaaaagacctacctttggaccctgtggaccacaaagaccaggatgga
tcatatgattaccagaacgaaaacagcagcgatgaggacaacaaacctttgcagggaagt
cagacctctctagatggcaatgtcaaggaaagtgatgacagtctcgtagactatggtgaa
ggaggggatggccagttcaatgaggacggatccttcataggccagtacacggtcaggaag
gataaggaggagacagagggcaacgagagctcagaggccacgtcgcctgttaatgccatc
tattctctggcgtag
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