Silurus meridionalis (southern catfish): 124402202
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Entry
124402202 CDS
T08004
Symbol
cdh4
Name
(RefSeq) cadherin-4 isoform X1
KO
K06797
cadherin 4, type 1, R-cadherin
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo04514
Cell adhesion molecule (CAM) interaction
smeo04519
Cadherin signaling
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecule (CAM) interaction
124402202 (cdh4)
04519 Cadherin signaling
124402202 (cdh4)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
smeo04515
]
124402202 (cdh4)
Cell adhesion molecules [BR:
smeo04515
]
Cadherins
Major cadherins
124402202 (cdh4)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
Cadherin_pro
CADH_Y-type_LIR
Cadherin_FAT4_N
Ig_CLSTN
F59B103_C
Cytomega_TRL10
NCMAP
DUF4690
Orf78
Motif
Other DBs
NCBI-GeneID:
124402202
NCBI-ProteinID:
XP_046730993
LinkDB
All DBs
Position
19:13578099..13990340
Genome browser
AA seq
1103 aa
AA seq
DB search
MKVGFVLPLACALVLKSSLDAAGSLTMDPCRLGFSQNFYTVFIPWEQLRGHTIVKGTLLS
SGQVKFEACHLNERISFESSDPKFSVRPDGSLYAEQDVTSPSEPIQFVVTAQRSIDTQVW
RTIVKLVIIRHPHPSRINQIVVKANSHHKHHHNLSHHQRGFSTNNLHWQDRIISPISTPE
HARRASPFWGSAGGPTTDPCRPGFSQNFYTVFIPREQLQGQSVVKGTLLSSARVIFEACH
LNERISFESSDPKFGVHPDGSLYAEQDVMNLSEPIQFMVTAQGSKDTRIWETTVKLAVAG
HPLPALINQIGDETGYHSRSHHNHYSNPRVIMFPRRHQRGSSTNGLRRQKRDWVIPPINV
PENSRGPFPQMLVRIRSDQDKEIEIRYSITGAGADQPPSDVYIIDPISGKMSVTKPLDRE
DRASYHLRAHAVDVNGNQMEPPIDLYIYVIDMNDNRPEFQNQVYNGSVPEVSKPGTSVMR
VTAIDADDSTMPNGLVHYRILNQSPHIPIPNMFTINGGTGEISTIAAGLDREKVSQYTLI
VQATDMEGSLNFGLSNTATALITVTDINDNPPELDAKTFLGEVPENAVGVIVANLTVRDR
DQPHTPNWNAVYRIVGGDSMGHFTIRTDELTNDGRVTVVKPVDYERNGAFMLTVVVSNQA
HLASGIPSSLSSTAGVTISVLDVNEAPIFPSNPKVIRFEEGVPADTTLTIFAAQDPDRFI
QQSVRYSKLSDPGNWLRINRTNGQITTTAILDRESPYVKNNVYEASFLAVDNGSPPATGT
GTLQIYLIDVNDNVPVLVPREAQLCERPRPNSRINITASDADTEPNAGPYVFELPSFPPS
VRRNWTVTRLNGEYAQLRLRIAYLEAGVYRVPILVSDSGNPPLTNRSIIRVKVCPCDEHG
DCTSLGAVASASLGTGAIIAILICIIILLSMVLFFVVWMKRREKERQTKPLLIDPEDDVR
DNILKYDEEGGGEEDQDYDLSQLQQPETLEHIMSKPGGVRRVDERPVIPESQYPIRPSIP
HPEDIGEFITDVGPVKGLRAADNDPTAPPYDSLLVFDYEGSGSTAGSVSSLDSSSSEEQD
YDYLNDWGPRFKKLADLYGGGDD
NT seq
3312 nt
NT seq
+upstream
nt +downstream
nt
atgaaagtcggctttgttcttcctctggcgtgcgctttagtgctgaaaagctcactggat
gctgctggaagtctgactatggatccatgtagactcggattttcccagaacttctacacc
gtgtttatcccatgggagcagctgcggggtcacaccattgtcaaaggcaccctgctgtca
tcaggtcaagtgaagttcgaggcttgtcatctgaatgagcggatcagcttcgagagcagc
gaccccaaattcagcgttcgtcccgacggctctctttacgccgagcaagacgtaaccagc
ccgtccgagcccatacagtttgtggtgactgctcagaggagcatcgacacgcaggtctgg
aggacgattgttaaactggtcatcatcagacacccacatccttcccgtataaaccagatt
gttgtcaaggccaattcccatcacaagcaccatcacaatcttagtcaccaccagcgaggg
ttttccaccaataatttgcactggcaagaccggatcatttctccaatcagtacgcctgaa
cacgccaggagagcgtctccattttgggggagtgctggaggtccgaccacggatccatgc
agacccggattctcccagaacttctacaccgtgtttatcccacgggagcagctgcagggc
caaagcgttgtcaaaggtaccctgctgtcatctgctcgagtgatattcgaggcttgtcat
ctgaatgagcggatcagcttcgagagcagcgaccccaaattcggcgttcatccggacggc
tctctgtacgctgagcaagatgtgatgaacctgtccgagcctatacagttcatggtgacg
gctcaagggagcaaagacacgcggatctgggagacgaccgttaaactggctgtcgccgga
cacccacttcctgccctcataaaccagattggtgatgaaactggataccactcaagatcc
caccacaaccactactccaatcccagagtcatcatgttcccccgtcgacaccagcgaggc
tcctctaccaacgggctgcgtcgtcagaagagagactgggtcatacctcctatcaatgtg
cctgagaactctagaggaccctttccacaaatgcttgtcaggatccgatcggaccaagat
aaggagatcgaaatccggtacagcataacgggagctggcgctgatcagccacccagtgat
gtctacatcattgaccccatcagtgggaaaatgtctgtgaccaagccgctggacagagaa
gaccgagcctcctaccacctgagagcccatgccgtggacgtcaacggtaatcagatggaa
cctccgatcgatctgtacatttacgtcattgatatgaacgacaacagacccgagtttcag
aaccaggtctataatggatctgttcctgaggtctccaaaccaggcacgtcggtgatgcgc
gttacggcgatcgacgccgatgacagcacgatgcccaacggcctggtgcactacaggatc
ctaaaccagagtccacacatcccaattcccaacatgtttaccatcaacggagggacgggc
gagatcagcaccatcgcagcaggcctagacagagagaaagtttctcagtacacgctgatc
gtgcaggctacagacatggagggcagcctgaacttcggcctctccaacacggcgacggct
ctcatcaccgtcaccgacatcaacgacaaccctccagagctcgacgccaaaacgttcctg
ggtgaggtgccggagaatgcagtgggtgtaatcgtggccaatttgactgtgcgagaccgg
gaccagcctcacacgcccaactggaacgcagtttacagaatagtgggcggagactcgatg
ggccacttcaccatccgcacggacgaactcaccaatgacggcagagtcacagtggtcaag
ccagtggactatgagaggaacggggccttcatgttgaccgtggtggtatctaatcaggcc
catctggccagtggcatcccgtcatctctctcatccacagcgggagtcaccatctccgtg
ttggatgtgaacgaggctcccattttcccctccaaccccaaagttattcgctttgaggag
ggagttcctgctgatactacgctcaccatattcgccgctcaggatccagaccgatttatt
caacagagtgtcaggtactctaagctgtccgatcctggaaactggctccgaatcaacagg
acaaacggccagatcacaacgacagccattttggatcgggaatcgccttacgtgaaaaat
aacgtgtatgaagcgagttttctggctgtagataacggctctcctcctgccacaggaaca
gggactctgcagatctatttgattgatgtaaatgataatgtaccagtgctggtgcccaga
gaggcccagctgtgtgagaggccaagacccaactccaggatcaacatcacggcctcggac
gctgatactgagcccaatgctggaccatatgtcttcgagctgccctcgttccctccctct
gttcgtcgcaattggaccgttacacgtctgaatggtgaatatgctcagctcaggttgagg
atcgcataccttgaagccggtgtgtatcgcgtgcccatcctggtctcagactcgggaaac
cctcccttaacaaaccgctccatcatcagggttaaggtgtgtccttgcgatgagcatgga
gattgtacttcactcggagcagtggcatctgcaagcctgggcacaggcgccatcatcgcc
atcctcatctgtatcataatcttgttaagcatggttctgtttttcgtagtgtggatgaag
cgcagagagaaggaacgacagaccaaacctcttctcattgacccagaggatgatgttagg
gacaacatactgaaatatgacgaggagggaggaggagaggaggatcaggactacgacctg
agccagctgcagcagcccgagactcttgagcacatcatgagcaagccagggggagtaagg
agagtggacgaaaggccagtcatcccggagtcccagtacccaatacggcccagcatacct
catcctgaagacatcggggagtttatcactgatgtaggtccagttaaggggctgcgagcg
gcggataatgacccgacggctccaccgtatgactctctgctcgtgtttgattacgaaggc
agcggctcgacagctggctcggtcagctcgctcgactcgtccagttcggaagagcaggac
tacgactacctcaatgactgggggccgcgctttaaaaaactggccgacctctacggcggc
ggcgatgactga
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