Silurus meridionalis (southern catfish): 124402226
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Entry
124402226 CDS
T08004
Symbol
ddx19b
Name
(RefSeq) ATP-dependent RNA helicase DDX19B
KO
K18655
ATP-dependent RNA helicase DDX19/DBP5 [EC:
5.6.2.7
]
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo03013
Nucleocytoplasmic transport
smeo03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
124402226 (ddx19b)
03015 mRNA surveillance pathway
124402226 (ddx19b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smeo03019
]
124402226 (ddx19b)
Enzymes [BR:
smeo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
124402226 (ddx19b)
Messenger RNA biogenesis [BR:
smeo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
124402226 (ddx19b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
Motif
Other DBs
NCBI-GeneID:
124402226
NCBI-ProteinID:
XP_046731032
LinkDB
All DBs
Position
19:complement(13274239..13279833)
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AA seq
483 aa
AA seq
DB search
MATDSWAQAVDQQEAAAESISTLHLNEKEDKPKDKPKAEQNGAKAAGEGGKTEEEEKEDK
AAQSLLNKLIRSNLVNTTNQVEVLQRDPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPS
KIQENALPMMLAEPPQNLIAQSQSGTGKTAAFVLAMLSHVDPSNRWPQCLCVSPTYELAL
QTGKVIEQMGQFYPEVKLVYAIRGNKLERGVKLQEQIVIGTPGTVLDWCQKLKFIDPKKI
KVFVLDEADVMIATQGHQDQSIRIQRMLPKSCQMLLFSATFEESVWNFAKRIIPDPNIIK
LKREEETLDTIKQYYVVCNSKEQKFQALCNIYGAITIAQAMIFCHTRKTAGWLAGELSRE
GHQVALLSGEMQVEQRAAVIDRFRNGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDG
NPDNETYLHRIGRTGRFGKRGLAINMVDSKFSMSILERIQEHFNKTIEELDTDDLDEIEK
IAH
NT seq
1452 nt
NT seq
+upstream
nt +downstream
nt
atggctacggattcctgggctcaggctgtggatcaacaagaagctgcagctgagtcgata
agcacccttcacttaaatgaaaaggaagacaaaccaaaagacaaaccaaaagcagagcaa
aatggtgcaaaggctgcgggtgaaggagggaagactgaggaggaagaaaaagaggacaaa
gcggctcagtcactgttgaacaagttgatacgaagcaatctcgtgaacaccaccaaccaa
gtggaagttcttcagagggatccgaactctccgctttactctgtcaagtcgtttgaggag
ctgcgtttgaagcctcagctacttcaaggggtttacgccatgggtttcaacagaccttct
aaaatccaagagaatgccttgcccatgatgcttgcagaacccccacagaatcttatagcg
cagtctcaatctggtacgggtaaaactgctgcctttgtcctggccatgcttagtcacgtg
gaccccagcaacagatggcctcagtgcctgtgtgtgtcgcctacatacgagcttgccctc
cagacgggcaaggtcatcgaacagatgggccaattttaccctgaagtcaagttggtgtat
gccatccgaggaaacaaattggagagaggggtgaagctccaggagcagattgtgattggc
acccctggcacagtcctggactggtgccaaaaactcaaattcatcgacccaaagaaaatt
aaagtgtttgttctggacgaagcagacgtcatgatcgccacacagggtcaccaggaccaa
agcattcgcatccagagaatgttgcccaaaagctgccagatgctcttgttctcagccacg
ttcgaggagtctgtctggaacttcgccaagaggatcatccctgatccaaacatcatcaaa
ctgaagagggaggaagagactctggacaccattaagcagtattacgtggtgtgcaacagc
aaggagcagaagttccaagccctgtgtaacatctatggtgccatcactatcgcacaggcc
atgatcttctgtcataccaggaaaacggctgggtggctagcaggagagctgtcaagggag
ggccaccaggtggcgctactcagtggtgagatgcaggtggaacagagagcagcagttatc
gatcgtttccgcaacggcaaagagaaagttctggtcactacgaacgtctgtgccagaggt
atcgatgtggagcaggtctctgtggttattaacttcgatttacccgtggataaggacgga
aaccctgacaacgagacgtacttgcacaggatcgggcgcacagggagatttggcaagaga
gggctagcaatcaatatggtggacagcaagtttagcatgagcattctcgaacgcattcag
gagcacttcaataagacaatcgaagaactggacacggacgatctggacgaaatcgagaaa
atagcacactga
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