Silurus meridionalis (southern catfish): 124402240
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Entry
124402240 CDS
T08004
Symbol
fgd5a
Name
(RefSeq) FYVE, RhoGEF and PH domain-containing protein 5 isoform X1
KO
K05724
FYVE, RhoGEF and PH domain containing 5/6
Organism
smeo
Silurus meridionalis (southern catfish)
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
smeo04990
]
124402240 (fgd5a)
Domain-containing proteins not elsewhere classified [BR:
smeo04990
]
Pleckstrin homology (PH) domain-containing proteins
Dbl-Like RhoGEF family proteins
124402240 (fgd5a)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RhoGEF
PH
FYVE
SOS1_NGEF_PH
PH_13
RHG20_PH
FYVE_2
IQ_SEC7_PH
PH_20
Prok-RING_2
Motif
Other DBs
NCBI-GeneID:
124402240
NCBI-ProteinID:
XP_046731060
LinkDB
All DBs
Position
19:complement(15192002..15229335)
Genome browser
AA seq
1540 aa
AA seq
DB search
MKMNTDCQKHIQTPQPEIQSRLAITVHSTLMSRPCLSSRGAKPPVAPKPKLSAQQEGEHS
QCIVSNGDVASELELAQDSESESTQDEADPPGETYGEDNSEQLVNNHDGTDDKETEVLQM
GVEERDEIDGEEKESNFEVVNEPLMNEVKNVSVSAALDHIKETDDSHPQPVPGDPDDTAV
DPVEKETAMEYQTRDESEAVNSNLSPYEEIEESPSNQGSTYEEIDRAEELMSDTANDIEE
PCFNDKESLCGTSVDTTANKLCESSTGDSSNAPAGFSSQAMNGSQPSLCEEYPYDVIGPL
DDTSAWQPERATKDESGRFRFSERAEDVFEPYSVIEVVPADLMSTSDPELEGADEDCSEE
KAKMATTQEPFYVSPDAVAEVEEDQGQVEDNGNLLNEPLEEELKETLTRDEVDEYANIED
SLCQDEDDQQLECASSEDYVEIGDEDEPVDMKRKTKGKNTKERSAIRRQSGVSKRSSCQP
RLRLCDITVPPGLDLGRTPELTNRLVFAHTTEAFEEDIEDLDCHIVPFFEDSESDSDEHI
YEEAGFDSEGENFITLDRKTIVTRSRSLSGKVPGYVPETVPEETGNESQTHDYYTVSLDQ
NGDLLKVSDNSESNRKIHSLNSRRFLFTPRSYSAEGRDITLSAHLEGSHSPRVDRVKRTD
DTLSLPCVISSSGSFSQRSHQSSSGVSTPTSLVDIPPPFELAYITKRPITKSSPSLLIQH
ESNDRPKKKKTSFKRFLGLKFRWKPDSKSHADGSVRSSRSSSESSHHGPARVIELDRRSN
GSSPQPQSRIIKPQRNSDFPATFLLYKDGQKKKGVPKTYGNRGISRVESFEDRSRPPFIP
LPLTKPRSISFPSADTSDYENIPAMSSDYENIQIPAGRPTRAVTITEFFDDQNRTAAANE
NDGYVDMNIFAGIENKTNAQEQETESFRMYRRLSAYTEPFPVCPAPALNFTEEDHGRTSE
EEEGNADQSSDRQIDGRSRAYYVAKELLDSEREHVKTLKLLQVDFRAAVEEAAGEDGEPV
VEEGTMDKILSTLPQAYQLHTDILTQLDSRIQQWEESPKIVDVFLEHCEEFGIFATYICA
YDRSMALLEESCRRSKAFADVVKRFEQQNSEGVQIPVKHQLLQIIVRVLQYRMLLTDYLN
NLSPDSKEYEDTQAALVIVSEVADQANDNLKEGENLLRLVHIEYSVKGKRSLLQPGRVFV
KEGTLMKVSRKSRQPRHLFLMNDMILYTYPQQDGKYRMKNTLLLTGMKVSKPVIDNVLNT
LRIEVNDVNITLSASSVGEREDWFHTLSRAIADHAAGLNTFSSSSEAREKLWMSLGEAAP
VLVPISHAMMCMNCTSDFSLTLRRHQCNACGKVVCRSCSRNRYPLKYLKDRMVKVCDRCY
NELKKRGGNVPIPCGSASPHTQRASRPLSAVFQSLQPPSLWKNRKSSTTSPLAQVSVGAE
GSTMSGSLQRRKKSKRKWKRLWFLLKDKVLYTFTAREDKVASESLPLRGFTVKLSDHSEG
EDAGGVFQLYHKKTLYYTFRADDHYTARRWVNAMEEATIL
NT seq
4623 nt
NT seq
+upstream
nt +downstream
nt
atgaagatgaacacagattgtcagaaacatattcaaacaccacaaccagaaatccaaagt
cgtctagccattacagtgcactccaccctcatgtcaagaccttgtctgtcttcccgaggt
gctaaacctccagttgctccaaagccaaaactctctgctcagcaagaaggtgaacacagc
caatgcattgttagtaatggagatgtcgcatcagaattggaactagcacaggacagtgaa
tcggaatccacacaagatgaagctgacccaccaggagagacctatggtgaggacaattct
gaacagttagttaacaatcatgatggtactgatgataaagaaacagaagtcctgcagatg
ggggtagaagaaagagatgaaatagatggagaagaaaaggagagcaactttgaagttgtt
aatgaacctctaatgaatgaggtaaaaaatgttagtgtttcagctgctttagaccacatc
aaagaaacagatgattcacacccacaaccagtcccaggtgatcctgatgatacagcagtt
gatcctgttgagaaagagaccgccatggagtatcaaacaagggatgaatcagaggctgtc
aatagcaatctgagcccttatgaagaaattgaggagtctccttcaaatcagggcagtact
tatgaagagatagatcgtgccgaggagcttatgtcagacactgctaatgatatagaggag
ccttgttttaatgacaaagagtccctctgtggaacctcagtagatactacagccaataag
ttatgtgagagtagcacaggggattcctcaaatgcaccggctggattttcttctcaggct
atgaatggcagtcagccctccctgtgtgaggaatacccatatgatgtcatcggacctctg
gatgacaccagtgcatggcagccagaacgtgccaccaaagacgaatcaggacgcttcaga
ttctcagagagagcagaggatgtgtttgagccttactcggtcatagaggtggtgcctgct
gatctaatgagtacctcagatcccgaactagagggtgcagatgaggactgtagcgaagag
aaagcaaaaatggcaaccactcaggagcctttttacgtttcacccgatgctgtagcagaa
gtagaagaagatcagggtcaggtggaggacaatggaaatttacttaatgaaccattggag
gaggagcttaaggaaactttaacgagagatgaagtagatgagtacgccaacatagaagat
tctctttgccaggacgaagacgatcagcagctggagtgtgcgtcgtctgaggattatgta
gagataggtgatgaagatgagcccgtggacatgaaacgtaaaacgaaagggaagaacaca
aaagagcgctcagccattcgcaggcaaagtggtgtgagcaagagaagcagctgccaaccg
cggcttagactttgcgatataacagtgcctcctggcctcgacttgggcaggactcctgaa
ctaacaaatcgtttagtgttcgcccacaccaccgaggcatttgaggaggacatagaggac
ctcgactgccacatagtgcctttttttgaggactctgaatcagatagtgatgagcacatt
tacgaggaggcaggctttgactcggaaggagagaactttatcactctggacagaaagacc
attgtgactcgctcacggtcactttctggcaaagtacccggatatgtccctgagactgtt
cccgaggagacaggcaacgagtctcaaactcatgactattatactgtgtccttggaccaa
aatggagatctattgaaagtctcagataattcagagtccaaccggaagatccattcgctg
aactctagacggttcctgttcaccccacgatcttattctgcagagggcagagacataaca
ctatcagcccatttggagggcagtcattcacccagagtggacagagtgaaacggacagat
gacactctttctctaccttgtgtcatctcttcttctggcagcttttctcaaagaagccat
cagtcctctagtggtgtgtctacacctacatctcttgttgacatcccaccaccctttgag
ctggcttacatcaccaagaggcctatcactaaaagttcaccatctctacttattcaacat
gaatctaacgacaggccgaaaaagaaaaagacttcatttaagcgttttctgggtcttaag
ttcaggtggaaacccgacagcaaatcgcacgctgatggcagcgtacgttcttccagatcg
tcatctgaatctagccaccatggccctgctcgggtaatagagctggatcggcggagcaat
ggcagctcccctcaacctcagtcccgcatcataaaaccacaacgcaactcagactttcct
gccacatttttgctttacaaagacgggcagaaaaagaaaggtgtaccgaaaacctatggc
aacagaggcatctcccgagtcgagtctttcgaggatcgatctcggccccccttcatacca
ctcccactcaccaaacctcgatccatctccttcccaagcgctgacacttccgactatgaa
aacattccagccatgagctcagattatgagaatatccagattccggcggggaggcccact
cgggccgtcaccatcaccgagttctttgacgaccaaaatcggacagcagctgcaaacgag
aatgacggttatgtcgacatgaacatctttgcaggaatagagaacaaaacaaacgcacaa
gagcaagagacggagagctttcggatgtatagaagactgagtgcatacacagaacctttc
cccgtgtgtccagctcctgccttgaattttacagaggaagaccacgggcgcacgtcagag
gaggaggaaggcaacgctgatcagagctctgacagacagattgatggtagatccagagcg
tactatgtagccaaagagctgctggattcggagagagaacatgtgaagacactgaaacta
cttcaagtggatttcagggcagcagttgaagaggcagcaggggaggatggcgagcccgtg
gtggaggagggaacgatggacaagattctcagcactctgcctcaggcctaccagctccac
acagacatccttacacaactggactcccgcattcaacagtgggaagagagcccaaagata
gtggacgtctttttggagcactgtgaggagtttgggattttcgcgacctacatttgcgct
tatgaccgcagcatggctctgctggaggagagctgcagacggagcaaagccttcgctgat
gtcgtcaaacgcttcgagcagcagaattccgagggagtgcagattcctgtgaaacaccag
ctgctgcagatcatcgtgcgggtcctccaataccgcatgcttctcacagattacttgaac
aacctttcccctgactctaaagaatatgaagacacacaagctgcgttggtgattgtgtca
gaggttgcagaccaggccaacgacaacctgaaagagggggagaacttgctgcgtctagtc
cacattgagtacagtgtgaaggggaagagaagtctgctgcagccaggaagagtgtttgtg
aaagagggcacgcttatgaaggtctcacgaaagagccgacagcctcgacatctgttcttg
atgaacgacatgatcctgtacacctaccctcagcaggatgggaaatacaggatgaaaaac
actcttcttctcactgggatgaaggttagcaaaccggtcattgataacgtcctcaacaca
ctaaggatcgaggtcaatgatgtcaacatcacgctctcagccagctctgtaggagaaaga
gaggactggttccacactctaagccgagctatagccgaccacgctgcaggcctcaatacg
tttagctcctccagcgaggccagagagaagctgtggatgtctttgggagaagccgcacct
gtcctggtgcccatttctcacgccatgatgtgcatgaactgcacgtcggatttcagtctc
accttgcgcagacaccaatgcaacgcgtgtggcaaggtggtgtgtcgctcctgctccaga
aacagatacccactgaagtatctgaaggaccgaatggttaaagtgtgtgaccgctgctac
aatgagctcaagaaacgaggtgggaatgttcctattccatgtggtagtgcgagcccacac
acacagcgtgccagcagacctctgtccgccgtgtttcagagcctgcagcctcccagcctg
tggaagaacaggaagagcagcacaacatcacctcttgctcaggtatctgtgggcgctgaa
ggctccactatgagtggaagtttgcagaggcgaaagaagagcaagcggaagtggaagagg
ctgtggttcctgctcaaagacaaggtgctctacaccttcacagctcgagaggataaggtg
gcgagtgaaagtttgcctcttcggggcttcacggtaaaactttctgatcactccgagggt
gaggacgctggtggggtctttcagctctaccacaaaaaaactctgtactatacgttccga
gcggacgatcattacactgcacgaagatgggtgaatgccatggaggaagccaccatatta
tag
DBGET
integrated database retrieval system
