Silurus meridionalis (southern catfish): 124402372
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Entry
124402372 CDS
T08004
Symbol
rhol
Name
(RefSeq) rhodopsin, like
KO
K04250
rhodopsin
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo04744
Phototransduction
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09150 Organismal Systems
09157 Sensory system
04744 Phototransduction
124402372 (rhol)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04030 G protein-coupled receptors [BR:
smeo04030
]
124402372 (rhol)
G protein-coupled receptors [BR:
smeo04030
]
Rhodopsin family
Vision
Opsin
124402372 (rhol)
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GFIT
Motif
Pfam:
7tm_1
Rhodopsin_N
DUF3930
7TM_GPCR_Srv
Motif
Other DBs
NCBI-GeneID:
124402372
NCBI-ProteinID:
XP_046731323
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Position
19:15701179..15702920
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AA seq
342 aa
AA seq
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MNATEGSNFYIPMSNATGVVRSPHEYPQYYLAEPWVFSLITIYMFFLILIGIPVNLFTLC
VTVQHKNLRTPIYYILVNMAMADLLVIVVSFPFAMHAAMHGYFVHGMVGCNFEGFFTVHA
TQISVWSLVVLAVERAMVSSQPSMDIRFRRRFVIKGIAFSWLMAFSCSLPPLFEWSRYIP
EGLQCSCGVDFYTLKPDIFNESYINYMFAVHLVVPLTIIILCFSRLLCVFNNEELDKIER
DANCVAVTLTLGFFMYWLPYASIGWHIFTNQGSAFSPFAMTLTSFFAKSSVLFSPLICVC
LDKQLRRGMIITLCLGKNPFPDDMGASKTEASSGSSSSVAPA
NT seq
1029 nt
NT seq
+upstream
nt +downstream
nt
atgaatgcaacagagggttccaatttctacatccccatgtccaacgcaaccggtgtagtg
cggagccctcatgagtacccgcagtactacctggccgagccatgggtgttctccttgatc
accatttatatgttcttccttattctaatcggcattcctgtcaacctcttcacgctctgc
gtcacagtgcagcacaagaatctgcgcacgccgatctactacatcctggtaaacatggca
atggccgacctccttgtaatcgtggtcagctttccgtttgcgatgcacgcagctatgcat
ggctatttcgtccacggaatggtgggatgcaacttcgaaggcttcttcacggtccacgct
acacagatttcagtgtggtccttggtagtcctggccgtggagagggccatggtgtcctcg
caacccagcatggacattcggttccgccggaggttcgtcattaagggcatcgcctttagt
tggctgatggctttcagctgttcgttgcctcctctcttcgagtggtcacggtacattcct
gagggtttgcagtgctcgtgtggagtcgatttctacaccttgaagcctgatatctttaat
gagtcttacatcaactacatgttcgccgtgcacctcgtcgtcccgctcaccatcatcatc
ttgtgcttcagccgactgctgtgtgtttttaacaacgaggagctcgataaaatcgagcga
gatgctaactgcgtggcagttacattgactttgggtttctttatgtactggttgccatat
gctagcatcggctggcatatcttcacaaaccaaggcagtgccttcagtcccttcgccatg
accttgacctcgttctttgccaagagctctgtgttgttcagtcccctcatttgcgtttgc
ctggacaagcagctccgccggggcatgatcatcacgctatgcctaggaaagaaccctttt
ccagatgatatgggagcctcgaagaccgaggcctcgtctggatcatccagctcagtggct
cctgcatga
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