Silurus meridionalis (southern catfish): 124402422
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Entry
124402422 CDS
T08004
Symbol
hnrnpa1a
Name
(RefSeq) heterogeneous nuclear ribonucleoprotein A1a
KO
K12741
heterogeneous nuclear ribonucleoprotein A1/A3
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124402422 (hnrnpa1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smeo03019
]
124402422 (hnrnpa1a)
03041 Spliceosome [BR:
smeo03041
]
124402422 (hnrnpa1a)
Messenger RNA biogenesis [BR:
smeo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
124402422 (hnrnpa1a)
mRNA cycle factors
Common to processing body (P body) and stress granule
124402422 (hnrnpa1a)
Spliceosome [BR:
smeo03041
]
Common components
Common spliceosomal components
hnRNP proteins
124402422 (hnrnpa1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_7
RRM_PARP14_3
Nup35_RRM_2
DNA_ligase_IV
Motif
Other DBs
NCBI-GeneID:
124402422
NCBI-ProteinID:
XP_046731410
LinkDB
All DBs
Position
19:complement(947784..959100)
Genome browser
AA seq
356 aa
AA seq
DB search
MSKETPREPEQMRKLFIGGLSFETTDESLRAHFEQWGTLTDCVVMRDPNTKRSRGFGFVT
YSSVNEVDAAMDARPHKVDGRAVEPKRAVSREDSCRPGAHSTVKKIFVGGIKEDTDEEHL
RDYFSQFGKIEEVNIMTEKNSDKRRGFAFVTFEDHDSVDRIVIQKYHTVNGHNCEVRKAL
SREEMNRVSMNNRGSRGGSGGNFGGRGGGYGGGYGGGGRGGYGDGDGYGNGYGGNGGYGG
GGPSYGGNRGYGGGGGGGYGNQGGGGYGGGGYDNYNGGGGGGGNYGGGNFGGGGDYNDFG
NYNNQSSSNYGPMKGGNYGGGGRSGSGGPYGGGYSGGSGGSGGGGGYGGGSGGRRF
NT seq
1071 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaagagacgcctcgtgaaccagagcagatgcgaaagctcttcattgggggtctg
agcttcgagacaacagatgagagcctccgggcgcattttgaacaatggggaactctgaca
gactgtgtggtgatgagggatccgaacactaagaggtcgagggggttcggcttcgtgacc
tacagctcggtgaacgaagtggacgcggcgatggacgcgcgacctcacaaagtggacggg
agagccgtggagcccaaaagagccgtctcgcgagaggactcgtgcaggccgggcgctcac
tccacggtgaagaagatctttgttggaggaatcaaagaggacacggacgaggagcacctg
cgtgactacttctctcagttcggcaaaatcgaggaggtgaacatcatgaccgagaagaac
agcgacaagaggcggggtttcgccttcgttacgtttgaagaccacgattcggtggacagg
atagtcattcagaagtaccacacagtgaacgggcacaactgtgaggtgaggaaagcgctt
tccagggaagagatgaacagagtgtccatgaacaacagaggaagtcgcggaggcagtgga
ggaaacttcggcggtcgaggaggaggatacggaggtggatatggaggaggtgggcgtggt
ggatatggggatggagacggatatggaaacggttacggaggaaacggtgggtacggggga
ggtggtcctagctacggcggtaaccgtggatacggagggggcggcggaggcgggtatgga
aaccagggcgggggtggatacggaggcgggggatacgacaactacaatggaggaggtgga
ggtggaggaaactacggaggaggaaactttggaggcggcggcgactataacgacttcggc
aactacaacaaccagtcgtcatctaattacggcccgatgaagggaggaaactacggaggt
ggaggacggagcggcagtggcggcccatacggcggcggctacagcggtggttccgggggc
agcggcggtggcggtggttacggaggtggatctggaggaaggaggttctaa
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