Silurus meridionalis (southern catfish): 124402503
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Entry
124402503 CDS
T08004
Symbol
smarcd1
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1
KO
K11650
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
124402503 (smarcd1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
smeo03021
]
124402503 (smarcd1)
03036 Chromosome and associated proteins [BR:
smeo03036
]
124402503 (smarcd1)
Transcription machinery [BR:
smeo03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
124402503 (smarcd1)
Chromosome and associated proteins [BR:
smeo03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
124402503 (smarcd1)
PBAF complex
124402503 (smarcd1)
GBAF(ncBAF) complex
124402503 (smarcd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIB
Motif
Other DBs
NCBI-GeneID:
124402503
NCBI-ProteinID:
XP_046731533
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All DBs
Position
19:complement(5812604..5835671)
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AA seq
519 aa
AA seq
DB search
MAARGGFQQAASGGGVGGGGGGIGPGPPVPGGGGPGMAPGTPAGRMGPAGPQNPMYRSPM
PGPGYPRPGMPPANRMTPQGPPMGPPGYGASPVPRPGMPVMDPSRKRPAPPQIPQQVQQQ
QNRNQHAKKKKMADKILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRLDIQEALKRPI
KQKRKLRIFISNTFNPAKPDAEDGEGTVASWELRVEGRLLEDTAVSKYEATKQKRKFSSF
FKSLVIELDKDLYGPDNHLVEWHRTPTTQETDGFQVKRPGDVGVRCTVLLMLDYQPPQFK
LDPRLARMLGIHTQTRPVIIQALWQYVKTHKLQDPHEREFINCDKYLQQIFETQRMKFSE
IPQRLHALLMPPEPIIINHVISVDPNDQKKTACYDIDVEVDDTLKTQMNSFLLSTASQQE
IAGLDNKIHETIETINQLKTQREFMLSFARDPQGFINDWLQSQCRDLKAMTDVVGNPEEE
RRAEFYFQPWAQEAVCRYFYSKVQQRRQELEQALGIRNT
NT seq
1560 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgcgtggcggttttcagcaggcagcatctggaggcggcgtaggcggtggtggc
ggcgggataggacctggacctccggtaccgggtggaggaggaccgggcatggctcctggt
acgcctgcaggaaggatgggacccgcgggaccacagaatccgatgtaccgttctccgatg
cctgggcctggatacccgagacccgggatgcctccggcaaacaggatgacgccccaaggg
ccacccatgggtcctccaggctacggcgctagtccagtacctcggcccggaatgccagtc
atggacccgtctcgcaaaaggcctgcaccacctcagatcccccagcaggtccaacagcaa
cagaaccgcaaccaacatgccaagaagaagaagatggctgataaaattctacctcaaaga
atcagagagctagttccagagtctcaggcttacatggatttgctggcctttgaaaggaag
ctggatcaaaccatcatgcgcaagagacttgatatccaggaggctctgaagagacctatc
aagcaaaaacgaaagctgcgaatttttatctccaacactttcaaccctgccaagcctgac
gctgaggacggcgagggaacagtagcatcatgggagctgcgagtggagggccgactgctt
gaggatactgctgtatctaaatacgaggccaccaagcagaagcggaaattttcctcgttc
ttcaagtctttggtgattgaattggacaaagacctgtatgggcctgacaatcatttggta
gagtggcacagaacacccactactcaggagactgacggctttcaggttaaaaggcctgga
gacgtgggagtgcgctgtactgtcctgctcatgctcgactaccagcctcctcagtttaaa
ctggaccccagactggctcgcatgctgggcatccatacccagaccagaccagtcatcatc
caggctctgtggcagtacgtgaagacacacaaactgcaggacccacatgagcgcgagttc
atcaactgtgacaaatacctccagcagatctttgagactcagcggatgaagttttctgag
atccctcagcggctgcatgctttgctgatgcctcctgaaccgatcatcatcaaccatgtt
ataagtgtggacccgaacgaccaaaagaaaacggcctgctatgatattgacgtcgaagtg
gatgatacacttaaaacccagatgaactcttttctgctgtccactgccagtcagcaggag
atcgcaggcttggataacaagatccatgaaaccatcgagaccatcaatcagctgaagact
cagagggagttcatgctgagctttgcccgtgatcctcagggctttatcaatgactggctg
cagtcccagtgcagggacctcaaggccatgaccgatgtggtaggaaacccagaagaagag
agaagagcagagttctatttccagccctgggctcaagaagcagtttgtcgctacttctac
tccaaggtccagcagaggagacaagagctggagcaagcactgggcatccggaacacataa
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